Literature DB >> 15087491

Two-step total gene synthesis method.

Lei Young1, Qihan Dong.   

Abstract

In the post-genomic era, the ability to synthesize any arbitrary DNA sequence is increasingly in demand. A bottleneck in current gene synthesis technologies is the associated cost, due primarily to the high cost of oligonucleotides synthesis and post-synthesis sequencing. In the present paper, an improved method for low-cost gene synthesis that combines dual asymmetrical PCR and overlap extension PCR is presented, which enables any DNA sequence to be synthesized error free. Additionally, the method is easily amenable to automation.

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Year:  2004        PMID: 15087491      PMCID: PMC407838          DOI: 10.1093/nar/gnh058

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  Bridge-overlap-extension PCR method for constructing chimeric genes.

Authors:  R K Mehta; J Singh
Journal:  Biotechniques       Date:  1999-06       Impact factor: 1.993

2.  Dual asymmetric PCR: one-step construction of synthetic genes.

Authors:  G S Sandhu; R A Aleff; B C Kline
Journal:  Biotechniques       Date:  1992-01       Impact factor: 1.993

3.  Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning.

Authors:  X Qiu; L Wu; H Huang; P E McDonel; A V Palumbo; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

4.  FokI method of gene synthesis.

Authors:  W Mandecki; T J Bolling
Journal:  Gene       Date:  1988-08-15       Impact factor: 3.688

5.  Studies on polynucleotides, 88. Enzymatic joining of chemically synthesized segments corresponding to the gene for alanine-tRNA.

Authors:  N K Gupta; E Ohtsuka; V Sgaramella; H Buchi; A Kumar; H Weber; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1968-08       Impact factor: 11.205

6.  The use of synthetic genes for the expression of ciliate proteins in heterologous systems.

Authors:  Yuankai Lin; Georgina Cheng; Xuting Wang; Theodore G Clark
Journal:  Gene       Date:  2002-04-17       Impact factor: 3.688

7.  DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis.

Authors:  David M Hoover; Jacek Lubkowski
Journal:  Nucleic Acids Res       Date:  2002-05-15       Impact factor: 16.971

8.  Cleavage specificity of bacteriophage T4 endonuclease VII and bacteriophage T7 endonuclease I on synthetic branch migratable Holliday junctions.

Authors:  S M Picksley; C A Parsons; B Kemper; S C West
Journal:  J Mol Biol       Date:  1990-04-20       Impact factor: 5.469

9.  Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.

Authors:  Hamilton O Smith; Clyde A Hutchison; Cynthia Pfannkoch; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-02       Impact factor: 11.205

10.  Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: a novel method of primer design for high-fidelity assembly of longer gene sequences.

Authors:  Xinxin Gao; Peggy Yo; Andrew Keith; Timothy J Ragan; Thomas K Harris
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

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  45 in total

1.  A highly efficient method for construction of rice artificial MicroRNA vectors.

Authors:  Xuming Wang; Yong Yang; Chulang Yu; Jie Zhou; Ye Cheng; Chengqi Yan; Jianping Chen
Journal:  Mol Biotechnol       Date:  2010-11       Impact factor: 2.695

2.  A quantitative model of error accumulation during PCR amplification.

Authors:  E Pienaar; M Theron; M Nelson; H J Viljoen
Journal:  Comput Biol Chem       Date:  2006-01-10       Impact factor: 2.877

3.  Protein fabrication automation.

Authors:  J Colin Cox; Janel Lape; Mahmood A Sayed; Homme W Hellinga
Journal:  Protein Sci       Date:  2007-01-22       Impact factor: 6.725

4.  Rational de novo gene synthesis by rapid polymerase chain assembly (PCA) and expression of endothelial protein-C and thrombin receptor genes.

Authors:  Tarlan G Mamedov; Nisha V Padhye; Hendrik Viljoen; Anuradha Subramanian
Journal:  J Biotechnol       Date:  2007-08-10       Impact factor: 3.307

5.  An alternative approach to synthesize cDNA bypassing traditional reverse transcription.

Authors:  Xiao-Xia Li; Fang Zheng; Yan-Li Jiao; Gang Guo; Bao-Li Wang; Zhi Yao
Journal:  Mol Biotechnol       Date:  2008-01-29       Impact factor: 2.695

6.  Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.

Authors:  Bryan J Jones; Huey Yee Lim; Jun Huang; Romas J Kazlauskas
Journal:  Biochemistry       Date:  2017-11-14       Impact factor: 3.162

Review 7.  Genome engineering.

Authors:  Peter A Carr; George M Church
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

8.  Efficient transposition of Tol2 in the mouse germline.

Authors:  Vincent W Keng; Barbara J Ryan; Kirk J Wangensteen; Darius Balciunas; Christian Schmedt; Stephen C Ekker; David A Largaespada
Journal:  Genetics       Date:  2009-10-05       Impact factor: 4.562

Review 9.  High-throughput cloning and expression library creation for functional proteomics.

Authors:  Fernanda Festa; Jason Steel; Xiaofang Bian; Joshua Labaer
Journal:  Proteomics       Date:  2013-04-05       Impact factor: 3.984

10.  An improved method of gene synthesis based on DNA works software and overlap extension PCR.

Authors:  Bingxue Dong; Runqian Mao; Baojian Li; Qiuyun Liu; Peilin Xu; Gang Li
Journal:  Mol Biotechnol       Date:  2007-08-03       Impact factor: 2.695

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