Literature DB >> 15087318

The SRS 3D module: integrating structures, sequences and features.

Seán I O'Donoghue1, Joachim E W Meyer, Andrea Schafferhans, Karsten Fries.   

Abstract

UNLABELLED: In this paper we present SRS 3D, a new service that allows users to easily and rapidly find all related structures for a given target sequence; structures can then be viewed together with sequences, alignments and sequence features (currently from UniProt, InterPro and PDB). Extensive user feedback confirms that SRS 3D is intuitive and useful especially for those not expert in structures. AVAILABILITY: An SRS 3D server is provided at http://srs3d.ebi.ac.uk/.

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Year:  2004        PMID： 15087318     DOI： 10.1093/bioinformatics/bth260

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  Aquaria: simplifying discovery and insight from protein structures.

Authors:  Seán I O'Donoghue; Kenneth S Sabir; Maria Kalemanov; Christian Stolte; Benjamin Wellmann; Vivian Ho; Manfred Roos; Nelson Perdigão; Fabian A Buske; Julian Heinrich; Burkhard Rost; Andrea Schafferhans
Journal:  Nat Methods       Date:  2015-02       Impact factor: 28.547

2.  MACSIMS: multiple alignment of complete sequences information management system.

Authors:  Julie D Thompson; Arnaud Muller; Andrew Waterhouse; Jim Procter; Geoffrey J Barton; Frédéric Plewniak; Olivier Poch
Journal:  BMC Bioinformatics       Date:  2006-06-23       Impact factor: 3.169

Review 3.  Visualization of macromolecular structures.

Authors:  Seán I O'Donoghue; David S Goodsell; Achilleas S Frangakis; Fabrice Jossinet; Roman A Laskowski; Michael Nilges; Helen R Saibil; Andrea Schafferhans; Rebecca C Wade; Eric Westhof; Arthur J Olson
Journal:  Nat Methods       Date:  2010-03-01       Impact factor: 28.547

Review 4.  From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase.

Authors:  Ursula Hinz
Journal:  Cell Mol Life Sci       Date:  2009-12-31       Impact factor: 9.261

5.  Integrated visual analysis of protein structures, sequences, and feature data.

Authors:  Christian Stolte; Kenneth S Sabir; Julian Heinrich; Christopher J Hammang; Andrea Schafferhans; Seán I O'Donoghue
Journal:  BMC Bioinformatics       Date:  2015-08-13       Impact factor: 3.169
  5 in total

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