Literature DB >> 15084682

Gene conversion and GC-content evolution in mammalian Hsp70.

Grzegorz Kudla1, Aleksandra Helwak, Leszek Lipinski.   

Abstract

To investigate the mechanisms regulating the nucleotide usage in mammalian genes, we analyzed the sequences of three physically linked Hsp70 paralogs in human and mouse. We report that the sequences of HSPA1A and HSPA1B genes are almost identical, whereas the HSPA1L gene contains some regions very similar to HSPA1A/B and some regions with much higher divergence. Phylogenetic analysis reveals that gene conversion has homogenized the entire coding regions of HSPA1A/B and several fragments of HSPA1L. The regions undergoing conversion are all very GC rich, contrarily to the regions not subject to conversion. The pattern of nucleotide substitution in mammalian orthologs suggests that the mechanism increasing the GC content is still functioning. To test the possibility that the high GC content facilitates the expression of Hsp70 during heat-shock, we performed in vitro translation experiments. We failed to detect any effect of GC content on the translation efficiency at high temperatures. Taken together, our data strongly support the biased gene conversion hypothesis of GC-content evolution.

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Year:  2004        PMID: 15084682     DOI: 10.1093/molbev/msh146

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  33 in total

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2.  Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes.

Authors:  Jonathan Romiguier; Vincent Ranwez; Emmanuel J P Douzery; Nicolas Galtier
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3.  GC-biased segregation of noncoding polymorphisms in Drosophila.

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Journal:  Genetics       Date:  2005-09-12       Impact factor: 4.562

4.  GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates.

Authors:  Adel Khelifi; Julien Meunier; Laurent Duret; Dominique Mouchiroud
Journal:  J Mol Evol       Date:  2006-04-28       Impact factor: 2.395

5.  Nonallelic gene conversion in the genus Drosophila.

Authors:  Claudio Casola; Carrie L Ganote; Matthew W Hahn
Journal:  Genetics       Date:  2010-03-09       Impact factor: 4.562

6.  The rate, not the spectrum, of base pair substitutions changes at a GC-content transition in the human NF1 gene region: implications for the evolution of the mammalian genome structure.

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Journal:  Genetics       Date:  2006-10-22       Impact factor: 4.562

7.  Genetic determinants of HSP70 gene expression following heat shock.

Authors:  Narelle Maugeri; Jayachandran Radhakrishnan; Julian C Knight
Journal:  Hum Mol Genet       Date:  2010-09-27       Impact factor: 6.150

8.  Both selective and neutral processes drive GC content evolution in the human genome.

Authors:  Uberto Pozzoli; Giorgia Menozzi; Matteo Fumagalli; Matteo Cereda; Giacomo P Comi; Rachele Cagliani; Nereo Bresolin; Manuela Sironi
Journal:  BMC Evol Biol       Date:  2008-03-27       Impact factor: 3.260

9.  Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes.

Authors:  Casey L McGrath; Claudio Casola; Matthew W Hahn
Journal:  Genetics       Date:  2009-03-23       Impact factor: 4.562

10.  New insights into the evolution of human Y chromosome palindromes through mutation and gene conversion.

Authors:  Maria Bonito; Eugenia D'Atanasio; Francesco Ravasini; Selene Cariati; Andrea Finocchio; Andrea Novelletto; Beniamino Trombetta; Fulvio Cruciani
Journal:  Hum Mol Genet       Date:  2021-11-16       Impact factor: 6.150

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