Literature DB >> 15075291

Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers.

Alvin T Kho1, Qing Zhao, Zhaohui Cai, Atul J Butte, John Y H Kim, Scott L Pomeroy, David H Rowitch, Isaac S Kohane.   

Abstract

Identification of common mechanisms underlying organ development and primary tumor formation should yield new insights into tumor biology and facilitate the generation of relevant cancer models. We have developed a novel method to project the gene expression profiles of medulloblastomas (MBs)--human cerebellar tumors--onto a mouse cerebellar development sequence: postnatal days 1-60 (P1-P60). Genomically, human medulloblastomas were closest to mouse P1-P10 cerebella, and normal human cerebella were closest to mouse P30-P60 cerebella. Furthermore, metastatic MBs were highly associated with mouse P5 cerebella, suggesting that a clinically distinct subset of tumors is identifiable by molecular similarity to a precise developmental stage. Genewise, down- and up-regulated MB genes segregate to late and early stages of development, respectively. Comparable results for human lung cancer vis-a-vis the developing mouse lung suggest the generalizability of this multiscalar developmental perspective on tumor biology. Our findings indicate both a recapitulation of tissue-specific developmental programs in diverse solid tumors and the utility of tumor characterization on the developmental time axis for identifying novel aspects of clinical and biological behavior.

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Year:  2004        PMID: 15075291      PMCID: PMC387239          DOI: 10.1101/gad.1182504

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  35 in total

1.  A greedy algorithm for aligning DNA sequences.

Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

Review 2.  Analysing gene expression data from DNA microarrays to identify candidate genes.

Authors:  T D Wu
Journal:  J Pathol       Date:  2001-09       Impact factor: 7.996

3.  Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach.

Authors:  Qing Zhao; Alvin Kho; Anna Marie Kenney; Dong-in Yuk Di; Isaac Kohane; David H Rowitch
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

4.  Prediction of central nervous system embryonal tumour outcome based on gene expression.

Authors:  Scott L Pomeroy; Pablo Tamayo; Michelle Gaasenbeek; Lisa M Sturla; Michael Angelo; Margaret E McLaughlin; John Y H Kim; Liliana C Goumnerova; Peter M Black; Ching Lau; Jeffrey C Allen; David Zagzag; James M Olson; Tom Curran; Cynthia Wetmore; Jaclyn A Biegel; Tomaso Poggio; Shayan Mukherjee; Ryan Rifkin; Andrea Califano; Gustavo Stolovitzky; David N Louis; Jill P Mesirov; Eric S Lander; Todd R Golub
Journal:  Nature       Date:  2002-01-24       Impact factor: 49.962

Review 5.  Stem cells, cancer, and cancer stem cells.

Authors:  T Reya; S J Morrison; M F Clarke; I L Weissman
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

Review 6.  Progenitor cells and glioma formation.

Authors:  E C Holland
Journal:  Curr Opin Neurol       Date:  2001-12       Impact factor: 5.710

Review 7.  Medulloblastoma.

Authors:  A T Reddy; R J Packer
Journal:  Curr Opin Neurol       Date:  1999-12       Impact factor: 5.710

8.  Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease.

Authors:  T J MacDonald; K M Brown; B LaFleur; K Peterson; C Lawlor; Y Chen; R J Packer; P Cogen; D A Stephan
Journal:  Nat Genet       Date:  2001-10       Impact factor: 38.330

9.  Altered neural cell fates and medulloblastoma in mouse patched mutants.

Authors:  L V Goodrich; L Milenković; K M Higgins; M P Scott
Journal:  Science       Date:  1997-08-22       Impact factor: 47.728

10.  Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses.

Authors:  A Bhattacharjee; W G Richards; J Staunton; C Li; S Monti; P Vasa; C Ladd; J Beheshti; R Bueno; M Gillette; M Loda; G Weber; E J Mark; E S Lander; W Wong; B E Johnson; T R Golub; D J Sugarbaker; M Meyerson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

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  79 in total

Review 1.  Medulloblastoma: therapy and biologic considerations.

Authors:  Timothy R Gershon; Orren J Becher
Journal:  Curr Neurol Neurosci Rep       Date:  2006-05       Impact factor: 5.081

2.  Formation of telomeric repeat-containing RNA (TERRA) foci in highly proliferating mouse cerebellar neuronal progenitors and medulloblastoma.

Authors:  Zhong Deng; Zhuo Wang; Chaomei Xiang; Aliah Molczan; Valérie Baubet; Jose Conejo-Garcia; Xiaowei Xu; Paul M Lieberman; Nadia Dahmane
Journal:  J Cell Sci       Date:  2012-05-28       Impact factor: 5.285

3.  Identification of dedifferentiation and redevelopment phases during postpneumonectomy lung growth.

Authors:  Alvin T Kho; Kaifeng Liu; Gary Visner; Thomas Martin; Francis Boudreault
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2013-08-30       Impact factor: 5.464

Review 4.  p53-Independent, normal stem cell sparing epigenetic differentiation therapy for myeloid and other malignancies.

Authors:  Yogen Saunthararajah; Pierre Triozzi; Brian Rini; Arun Singh; Tomas Radivoyevitch; Mikkael Sekeres; Anjali Advani; Ramon Tiu; Frederic Reu; Matt Kalaycio; Ed Copelan; Eric Hsi; Alan Lichtin; Brian Bolwell
Journal:  Semin Oncol       Date:  2012-02       Impact factor: 4.929

5.  Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes.

Authors:  Meaghan K Russell; Mauro Longoni; Julie Wells; Faouzi I Maalouf; Adam A Tracy; Maria Loscertales; Kate G Ackerman; Barbara R Pober; Kasper Lage; Carol J Bult; Patricia K Donahoe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-06       Impact factor: 11.205

6.  Evidence of spatially bound gene regulation in Mus musculus: decreased gene expression proximal to microRNA genomic location.

Authors:  Hidenori Inaoka; Yutaka Fukuoka; Isaac S Kohane
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-12       Impact factor: 11.205

7.  Expression profiles of the mouse lung identify a molecular signature of time-to-birth.

Authors:  Alvin T Kho; Soumyaroop Bhattacharya; Brigham H Mecham; Jungha Hong; Isaac S Kohane; Thomas J Mariani
Journal:  Am J Respir Cell Mol Biol       Date:  2008-07-29       Impact factor: 6.914

8.  Transcriptomic analysis of human lung development.

Authors:  Alvin T Kho; Soumyaroop Bhattacharya; Kelan G Tantisira; Vincent J Carey; Roger Gaedigk; J Steven Leeder; Isaac S Kohane; Scott T Weiss; Thomas J Mariani
Journal:  Am J Respir Crit Care Med       Date:  2009-10-08       Impact factor: 21.405

9.  MyoD is a tumor suppressor gene in medulloblastoma.

Authors:  Joyoti Dey; Adrian M Dubuc; Kyle D Pedro; Derek Thirstrup; Brig Mecham; Paul A Northcott; Xiaochong Wu; David Shih; Stephen J Tapscott; Michael LeBlanc; Michael D Taylor; James M Olson
Journal:  Cancer Res       Date:  2013-10-03       Impact factor: 12.701

10.  Cooperation between the Hic1 and Ptch1 tumor suppressors in medulloblastoma.

Authors:  Kimberly J Briggs; Ian M Corcoran-Schwartz; Wei Zhang; Thomas Harcke; Wendy L Devereux; Stephen B Baylin; Charles G Eberhart; D Neil Watkins
Journal:  Genes Dev       Date:  2008-03-15       Impact factor: 11.361

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