Literature DB >> 15073223

Applications of metabolic modelling to plant metabolism.

M G Poolman1, H E Assmus, D A Fell.   

Abstract

In this paper some of the general concepts underpinning the computer modelling of metabolic systems are introduced. The difference between kinetic and structural modelling is emphasized, and the more important techniques from both, along with the physiological implications, are described. These approaches are then illustrated by descriptions of other work, in which they have been applied to models of the Calvin cycle, sucrose metabolism in sugar cane, and starch metabolism in potatoes. Copyright 2004 Society for Experimental Biology

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15073223     DOI: 10.1093/jxb/erh090

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  19 in total

1.  Mathematical modeling-guided evaluation of biochemical, developmental, environmental, and genotypic determinants of essential oil composition and yield in peppermint leaves.

Authors:  Rigoberto Rios-Estepa; Iris Lange; James M Lee; B Markus Lange
Journal:  Plant Physiol       Date:  2010-02-10       Impact factor: 8.340

2.  Phenotypic characterization of Corynebacterium glutamicum using elementary modes towards synthesis of amino acids.

Authors:  Devesh Radhakrishnan; Meghna Rajvanshi; K V Venkatesh
Journal:  Syst Synth Biol       Date:  2011-02-22

3.  A scalable and integrative system for pathway bioinformatics and systems biology.

Authors:  Behnam Compani; Trent Su; Ivan Chang; Jianlin Cheng; Kandarp H Shah; Thomas Whisenant; Yimeng Dou; Adriel Bergmann; Raymond Cheong; Barbara Wold; Lee Bardwell; Andre Levchenko; Pierre Baldi; Eric Mjolsness
Journal:  Adv Exp Med Biol       Date:  2010       Impact factor: 2.622

4.  Mathematical modeling of the central carbohydrate metabolism in Arabidopsis reveals a substantial regulatory influence of vacuolar invertase on whole plant carbon metabolism.

Authors:  Thomas Nägele; Sebastian Henkel; Imke Hörmiller; Thomas Sauter; Oliver Sawodny; Michael Ederer; Arnd G Heyer
Journal:  Plant Physiol       Date:  2010-03-05       Impact factor: 8.340

5.  Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism.

Authors:  Eva Grafahrend-Belau; Falk Schreiber; Dirk Koschützki; Björn H Junker
Journal:  Plant Physiol       Date:  2008-11-05       Impact factor: 8.340

6.  Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale.

Authors:  Eva Grafahrend-Belau; Astrid Junker; André Eschenröder; Johannes Müller; Falk Schreiber; Björn H Junker
Journal:  Plant Physiol       Date:  2013-08-07       Impact factor: 8.340

7.  Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements.

Authors:  Dan Davidi; Elad Noor; Wolfram Liebermeister; Arren Bar-Even; Avi Flamholz; Katja Tummler; Uri Barenholz; Miki Goldenfeld; Tomer Shlomi; Ron Milo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

Review 8.  E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light.

Authors:  Ladislav Nedbal; Jan Cervený; Uwe Rascher; Henning Schmidt
Journal:  Photosynth Res       Date:  2007-05-11       Impact factor: 3.429

9.  Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells.

Authors:  Marie Beurton-Aimar; Bertrand Beauvoit; Antoine Monier; François Vallée; Martine Dieuaide-Noubhani; Sophie Colombié
Journal:  BMC Syst Biol       Date:  2011-06-20

10.  Modeling the Calvin-Benson cycle.

Authors:  Jiri Jablonsky; Hermann Bauwe; Olaf Wolkenhauer
Journal:  BMC Syst Biol       Date:  2011-11-03
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.