Literature DB >> 15073026

ArrayNorm: comprehensive normalization and analysis of microarray data.

R Pieler1, F Sanchez-Cabo, H Hackl, G G Thallinger, Z Trajanoski.   

Abstract

SUMMARY: ArrayNorm is a user-friendly, versatile and platform-independent Java application for the visualization, normalization and analysis of two-color microarray data. A variety of normalization options were implemented to remove the systematic and random errors in the data, taking into account the experimental design and the particularities of every slide. In addition, ArrayNorm provides a module for statistical identification of genes with significant changes in expression. AVAILABILITY: The package is freely available for academic and non-profit institutions from http://genome.tugraz.at

Mesh：

Year:  2004        PMID： 15073026     DOI： 10.1093/bioinformatics/bth174

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  15 in total

1.  Transcriptional regulatory program in wild-type and retinoblastoma gene-deficient mouse embryonic fibroblasts during adipocyte differentiation.

Authors:  Robab Hakim-Weber; Anne-M Krogsdam; Claus Jørgensen; Maria Fischer; Andreas Prokesch; Juliane G Bogner-Strauss; Stefan R Bornstein; Jacob B Hansen; Lise Madsen; Karsten Kristiansen; Zlatko Trajanoski; Hubert Hackl
Journal:  BMC Res Notes       Date:  2011-05-26

2.  Molecular processes during fat cell development revealed by gene expression profiling and functional annotation.

Authors:  Hubert Hackl; Thomas Rainer Burkard; Alexander Sturn; Renee Rubio; Alexander Schleiffer; Sun Tian; John Quackenbush; Frank Eisenhaber; Zlatko Trajanoski
Journal:  Genome Biol       Date:  2005-12-19       Impact factor: 13.583

3.  Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation.

Authors:  Birgit Kulterer; Gerald Friedl; Anita Jandrositz; Fatima Sanchez-Cabo; Andreas Prokesch; Christine Paar; Marcel Scheideler; Reinhard Windhager; Karl-Heinz Preisegger; Zlatko Trajanoski
Journal:  BMC Genomics       Date:  2007-03-12       Impact factor: 3.969

4.  GOLD.db: genomics of lipid-associated disorders database.

Authors:  Hubert Hackl; Michael Maurer; Bernhard Mlecnik; Jürgen Hartler; Gernot Stocker; Diego Miranda-Saavedra; Zlatko Trajanoski
Journal:  BMC Genomics       Date:  2004-12-10       Impact factor: 3.969

5.  MARS: microarray analysis, retrieval, and storage system.

Authors:  Michael Maurer; Robert Molidor; Alexander Sturn; Juergen Hartler; Hubert Hackl; Gernot Stocker; Andreas Prokesch; Marcel Scheideler; Zlatko Trajanoski
Journal:  BMC Bioinformatics       Date:  2005-04-18       Impact factor: 3.169

6.  SaDA: From Sampling to Data Analysis-An Extensible Open Source Infrastructure for Rapid, Robust and Automated Management and Analysis of Modern Ecological High-Throughput Microarray Data.

Authors:  Kumar Saurabh Singh; Dominique Thual; Roberto Spurio; Nicola Cannata
Journal:  Int J Environ Res Public Health       Date:  2015-06-03       Impact factor: 3.390

7.  Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

Authors:  Aristotelis Chatziioannou; Panagiotis Moulos; Fragiskos N Kolisis
Journal:  BMC Bioinformatics       Date:  2009-10-27       Impact factor: 3.169

8.  A controlled challenge study on di(2-ethylhexyl) phthalate (DEHP) in house dust and the immune response in human nasal mucosa of allergic subjects.

Authors:  Tom Deutschle; Rudolf Reiter; Werner Butte; Birger Heinzow; Tilman Keck; Herbert Riechelmann
Journal:  Environ Health Perspect       Date:  2008-07-07       Impact factor: 9.031

9.  Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis.

Authors:  Marcel Scheideler; Christian Elabd; Laure-Emmanuelle Zaragosi; Chiara Chiellini; Hubert Hackl; Fatima Sanchez-Cabo; Sunaina Yadav; Kalina Duszka; Gerald Friedl; Christine Papak; Andreas Prokesch; Reinhard Windhager; Gerard Ailhaud; Christian Dani; Ez-Zoubir Amri; Zlatko Trajanoski
Journal:  BMC Genomics       Date:  2008-07-17       Impact factor: 3.969

10.  Overexpression of primary microRNA 221/222 in acute myeloid leukemia.

Authors:  Anna Rommer; Katarina Steinleitner; Hubert Hackl; Christine Schneckenleithner; Maria Engelmann; Marcel Scheideler; Irena Vlatkovic; Robert Kralovics; Sabine Cerny-Reiterer; Peter Valent; Heinz Sill; Rotraud Wieser
Journal:  BMC Cancer       Date:  2013-07-29       Impact factor: 4.430
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.