Literature DB >> 15073015

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.

Thomas Huber1, Geoffrey Faulkner, Philip Hugenholtz.   

Abstract

SUMMARY: Bellerophon is a program for detecting chimeric sequences in multiple sequence datasets by an adaption of partial treeing analysis. Bellerophon was specifically developed to detect 16S rRNA gene chimeras in PCR-clone libraries of environmental samples but can be applied to other nucleotide sequence alignments. AVAILABILITY: Bellerophon is available as an interactive web server at http://foo.maths.uq.edu.au/~huber/bellerophon.pl

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Year:  2004        PMID： 15073015     DOI： 10.1093/bioinformatics/bth226

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  511 in total

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Journal:  Appl Environ Microbiol       Date:  2012-06-01       Impact factor: 4.792

2.  A microbial oasis in the hypersaline Atacama subsurface discovered by a life detector chip: implications for the search for life on Mars.

Authors:  Victor Parro; Graciela de Diego-Castilla; Mercedes Moreno-Paz; Yolanda Blanco; Patricia Cruz-Gil; José A Rodríguez-Manfredi; David Fernández-Remolar; Felipe Gómez; Manuel J Gómez; Luis A Rivas; Cecilia Demergasso; Alex Echeverría; Viviana N Urtuvia; Marta Ruiz-Bermejo; Miriam García-Villadangos; Marina Postigo; Mónica Sánchez-Román; Guillermo Chong-Díaz; Javier Gómez-Elvira
Journal:  Astrobiology       Date:  2011-12-09       Impact factor: 4.335

3.  Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus.

Authors:  Elizabeth A Shank; Vanja Klepac-Ceraj; Leonardo Collado-Torres; Gordon E Powers; Richard Losick; Roberto Kolter
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-10       Impact factor: 11.205

4.  Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates.

Authors:  K Kampmann; S Ratering; I Kramer; M Schmidt; W Zerr; S Schnell
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

5.  Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates.

Authors:  Marek Stibal; Fariha Hasan; Jemma L Wadham; Martin J Sharp; Alexandre M Anesio
Journal:  Extremophiles       Date:  2012-01-13       Impact factor: 2.395

6.  Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA.

Authors:  Dhritiman Ghosh; Krishnakali Roy; Kurt E Williamson; David C White; K Eric Wommack; Kerry L Sublette; Mark Radosevich
Journal:  Appl Environ Microbiol       Date:  2007-11-09       Impact factor: 4.792

7.  Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters.

Authors:  Byron C Crump; Cherie Peranteau; Barbara Beckingham; Jeffrey C Cornwell
Journal:  Appl Environ Microbiol       Date:  2007-08-31       Impact factor: 4.792

8.  Fumarole-supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes.

Authors:  Elizabeth K Costello; Stephan R P Halloy; Sasha C Reed; Preston Sowell; Steven K Schmidt
Journal:  Appl Environ Microbiol       Date:  2008-12-12       Impact factor: 4.792

9.  Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico.

Authors:  Christina A Kellogg; John T Lisle; Julia P Galkiewicz
Journal:  Appl Environ Microbiol       Date:  2009-02-20       Impact factor: 4.792

10.  Metabolically active microbial communities in marine sediment under high-CO(2) and low-pH extremes.

Authors:  Katsunori Yanagawa; Yuki Morono; Dirk de Beer; Matthias Haeckel; Michinari Sunamura; Taiki Futagami; Tatsuhiko Hoshino; Takeshi Terada; Ko-Ichi Nakamura; Tetsuro Urabe; Gregor Rehder; Antje Boetius; Fumio Inagaki
Journal:  ISME J       Date:  2012-10-25       Impact factor: 10.302
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