Literature DB >> 15073009

G-PRIMER: greedy algorithm for selecting minimal primer set.

Jiren Wang1, Kuo-Bin Li, Wing-Kin Sung.   

Abstract

UNLABELLED: G-PRIMER, a web-based primer design program, has been developed to compute a minimal primer set specifically annealed to all the open reading frames in a given microbial genome. This program has been successfully used in the microarray experiment for analyzing the expression of genes in the Xanthomonas campestris genome. AVAILABILITY: It is available at http://mammoth.bii.a-star.edu.sg/gprimer/. Its source code is available upon request.

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Year:  2004        PMID： 15073009     DOI： 10.1093/bioinformatics/bth259

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  MPprimer: a program for reliable multiplex PCR primer design.

Authors:  Zhiyong Shen; Wubin Qu; Wen Wang; Yiming Lu; Yonghong Wu; Zhifeng Li; Xingyi Hang; Xiaolei Wang; Dongsheng Zhao; Chenggang Zhang
Journal:  BMC Bioinformatics       Date:  2010-03-18       Impact factor: 3.169

2.  Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.

Authors:  Cheng-Hong Yang; Yu-Huei Cheng; Li-Yeh Chuang; Hsueh-Wei Chang
Journal:  BMC Bioinformatics       Date:  2010-10-13       Impact factor: 3.169

3.  URPD: a specific product primer design tool.

Authors:  Li-Yeh Chuang; Yu-Huei Cheng; Cheng-Hong Yang
Journal:  BMC Res Notes       Date:  2012-06-19

4.  An evaluation of custom microarray applications: the oligonucleotide design challenge.

Authors:  Sophie Lemoine; Florence Combes; Stéphane Le Crom
Journal:  Nucleic Acids Res       Date:  2009-02-10       Impact factor: 16.971
  4 in total

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