Literature DB >> 15073003

GeConT: gene context analysis.

R Ciria1, C Abreu-Goodger, E Morett, E Merino.   

Abstract

SUMMARY: The fact that adjacent genes in bacteria are often functionally related is widely known. GeConT (Gene Context Tool) is a web interface designed to visualize genome context of a gene or a group of genes and their orthologs in all the completely sequenced genomes. The graphical information of GeConT can be used to analyze genome annotation, functional ortholog identification or to verify the genomic context congruence of any set of genes that share a common property. AVAILABILITY: http://www.ibt.unam.mx/biocomputo/gecont.html

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Year:  2004        PMID： 15073003     DOI： 10.1093/bioinformatics/bth216

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  23 in total

1.  Transcriptional regulation of the assT-dsbL-dsbI gene cluster in Salmonella enterica serovar Typhi IMSS-1 depends on LeuO, H-NS, and specific growth conditions.

Authors:  A L Gallego-Hernández; I Hernández-Lucas; M A De la Cruz; L Olvera; E Morett; L Medina-Aparicio; J A Ramírez-Trujillo; A Vázquez; M Fernández-Mora; E Calva
Journal:  J Bacteriol       Date:  2012-02-17       Impact factor: 3.490

2.  The flagellar muramidase from the photosynthetic bacterium Rhodobacter sphaeroides.

Authors:  Javier de la Mora; Teresa Ballado; Bertha González-Pedrajo; Laura Camarena; Georges Dreyfus
Journal:  J Bacteriol       Date:  2007-09-14       Impact factor: 3.490

Review 3.  Biochemical features and functional implications of the RNA-based T-box regulatory mechanism.

Authors:  Ana Gutiérrez-Preciado; Tina M Henkin; Frank J Grundy; Charles Yanofsky; Enrique Merino
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 4.  Bioinformatics resources for the study of gene regulation in bacteria.

Authors:  Julio Collado-Vides; Heladia Salgado; Enrique Morett; Socorro Gama-Castro; Verónica Jiménez-Jacinto; Irma Martínez-Flores; Alejandra Medina-Rivera; Luis Muñiz-Rascado; Martín Peralta-Gil; Alberto Santos-Zavaleta
Journal:  J Bacteriol       Date:  2008-10-31       Impact factor: 3.490

5.  Coregulated genes link sulfide:quinone oxidoreductase and arsenic metabolism in Synechocystis sp. strain PCC6803.

Authors:  Csaba I Nagy; Imre Vass; Gábor Rákhely; István Zoltán Vass; András Tóth; Agnes Duzs; Loredana Peca; Jerzy Kruk; Péter B Kós
Journal:  J Bacteriol       Date:  2014-07-14       Impact factor: 3.490

Review 6.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

7.  Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation.

Authors:  Leticia Olvera; Alfredo Mendoza-Vargas; Noemí Flores; Maricela Olvera; Juan Carlos Sigala; Guillermo Gosset; Enrique Morett; Francisco Bolívar
Journal:  PLoS One       Date:  2009-10-19       Impact factor: 3.240

8.  Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB.

Authors:  J A Ramírez-Trujillo; S Encarnación; E Salazar; A García de los Santos; M F Dunn; D W Emerich; E Calva; I Hernández-Lucas
Journal:  J Bacteriol       Date:  2007-05-25       Impact factor: 3.490

9.  Intrinsic features of Aedes aegypti genes affect transcriptional responsiveness of mosquito genes to dengue virus infection.

Authors:  Susanta K Behura; David W Severson
Journal:  Infect Genet Evol       Date:  2012-05-03       Impact factor: 3.342

10.  Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors.

Authors:  Johannes Popow; Jennifer Jurkin; Alexander Schleiffer; Javier Martinez
Journal:  Nature       Date:  2014-05-25       Impact factor: 49.962
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