Literature DB >> 15070393

Zinc solid-state NMR spectroscopy of human carbonic anhydrase: implications for the enzymatic mechanism.

Andrew S Lipton1, Robert W Heck, Paul D Ellis.   

Abstract

The pH dependence of the (67)Zn solid-state nuclear magnetic resonance spectroscopy of human carbonic anhydrase (CAII) has been investigated to characterize the nature of the fourth ligand. CAII, through the Zn(2+)-bound hydroxide, catalyzes the deceptively simple reaction: CO(2) + H(2)O <==> HCO(3)(-) + H(+). The accepted mechanism for CAII would predict that water would be bound to the Zn(2+) at pH 5 and hydroxide would be bound at pH 8.5. The measured values for the electric field gradient (EFG) or quadrupole coupling constant (Cq) for CAII are independent of pH within the limits of the experimental error, i.e., 9.8 +/- 0.2 MHz. The EFG interaction has been predicted by ab initio electronic structure calculations for water and hydroxide bound to the zinc, including various levels of hydrogen bonding. After comparing the predicted Cq's with the experimental values, we conclude that the species present from pH 5-8.5 is the hydroxide form. The NMR data presented here is not consistent with the accepted mechanism for CAII. We show that the NMR data is consistent with an alternative mechanism of CAII.

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Year:  2004        PMID: 15070393     DOI: 10.1021/ja0305609

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

Review 1.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

2.  Non-crystallographic symmetry in proteins: Jahn-Teller-like and Butterfly-like effects?

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Journal:  J Biol Inorg Chem       Date:  2018-11-23       Impact factor: 3.358

3.  Zinc-binding structure of a catalytic amyloid from solid-state NMR.

Authors:  Myungwoon Lee; Tuo Wang; Olga V Makhlynets; Yibing Wu; Nicholas F Polizzi; Haifan Wu; Pallavi M Gosavi; Jan Stöhr; Ivan V Korendovych; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-31       Impact factor: 11.205

4.  NMR-based structural modeling of graphite oxide using multidimensional 13C solid-state NMR and ab initio chemical shift calculations.

Authors:  Leah B Casabianca; Medhat A Shaibat; Weiwei W Cai; Sungjin Park; Richard Piner; Rodney S Ruoff; Yoshitaka Ishii
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

5.  Residue ionization in LpxC directly observed by 67Zn NMR spectroscopy.

Authors:  Andrew S Lipton; Robert W Heck; Marcy Hernick; Carol A Fierke; Paul D Ellis
Journal:  J Am Chem Soc       Date:  2008-08-30       Impact factor: 15.419

Review 6.  Proton transfer function of carbonic anhydrase: Insights from QM/MM simulations.

Authors:  Demian Riccardi; Shuo Yang; Qiang Cui
Journal:  Biochim Biophys Acta       Date:  2009-08-11

7.  Low temperature 65Cu NMR spectroscopy of the Cu+ site in azurin.

Authors:  Andrew S Lipton; Robert W Heck; Wibe A de Jong; Amy R Gao; Xiongjian Wu; Adrienne Roehrich; Gerard S Harbison; Paul D Ellis
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

8.  Ultrahigh-field 67Zn NMR reveals short-range disorder in zeolitic imidazolate framework glasses.

Authors:  Rasmus S K Madsen; Ang Qiao; Jishnu Sen; Ivan Hung; Kuizhi Chen; Zhehong Gan; Sabyasachi Sen; Yuanzheng Yue
Journal:  Science       Date:  2020-03-27       Impact factor: 47.728

9.  Dynamic DMF Binding in MOF-5 Enables the Formation of Metastable Cobalt-Substituted MOF-5 Analogues.

Authors:  Carl K Brozek; Vladimir K Michaelis; Ta-Chung Ong; Luca Bellarosa; Núria López; Robert G Griffin; Mircea Dincă
Journal:  ACS Cent Sci       Date:  2015-07-29       Impact factor: 14.553

  9 in total

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