Literature DB >> 15064989

Bacterial diversity of the Inner Mongolian Baer Soda Lake as revealed by 16S rRNA gene sequence analyses.

Yanhe Ma1, Weizhou Zhang, Yanfen Xue, Peijin Zhou, Antonio Ventosa, William D Grant.   

Abstract

Bacterial diversity associated with Baer Soda Lake in Inner Mongolia of China was investigated using a culture-independent method. Bacterial 16S rRNA gene libraries were generated using bacterial oligonucleotide primers, and 16S rRNA gene sequences of 58 clones were analyzed phylogenetically. The library was dominated by 16S rDNAs of Gram-negative bacteria (24% alpha-Proteobacteria, 31% beta-Proteobacteria, 33% gamma-Proteobacteria, and 2% delta-Proteobacteria), with a lower percentage of clones corresponding to Gram-positive bacteria. Forty cloned sequences were similar to that of known bacterial isolates (> 97% sequence similarity), represented by the species of the genera Brevundimonas, Comamonas, Alcaligenes, Stenotrophomonas, and Klebsiella. Eighteen cloned sequences showed less affiliation with known taxa (< 97% sequence similarity) and may represent novel taxa.

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Year:  2003        PMID: 15064989     DOI: 10.1007/s00792-003-0358-z

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  35 in total

1.  Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria.

Authors:  M A Dojka; J K Harris; N R Pace
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2.  Novel archaeal phylotypes from an East African alkaline saltern.

Authors:  S Grant; W D Grant; B E Jones; C Kato; L Li
Journal:  Extremophiles       Date:  1999-05       Impact factor: 2.395

Review 3.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

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Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

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Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

6.  Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov.

Authors:  M Drancourt; C Bollet; A Carta; P Rousselier
Journal:  Int J Syst Evol Microbiol       Date:  2001-05       Impact factor: 2.747

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

9.  TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment.

Authors:  Y Van de Peer; R De Wachter
Journal:  Comput Appl Biosci       Date:  1994-09

10.  Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants.

Authors:  M A Tanner; B M Goebel; M A Dojka; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-08       Impact factor: 4.792

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  23 in total

Review 1.  Alkaline pH homeostasis in bacteria: new insights.

Authors:  Etana Padan; Eitan Bibi; Masahiro Ito; Terry A Krulwich
Journal:  Biochim Biophys Acta       Date:  2005-09-26

2.  Comparison of bacterial communities in the alkaline gut segment among various species of higher termites.

Authors:  Taksawan Thongaram; Yuichi Hongoh; Saori Kosono; Moriya Ohkuma; Savitr Trakulnaleamsai; Napavarn Noparatnaraporn; Toshiaki Kudo
Journal:  Extremophiles       Date:  2005-04-26       Impact factor: 2.395

3.  Bacterial diversity and carbonate precipitation in the giant microbialites from the highly alkaline Lake Van, Turkey.

Authors:  Purificación López-García; Józef Kazmierczak; Karim Benzerara; Stephan Kempe; François Guyot; David Moreira
Journal:  Extremophiles       Date:  2005-06-15       Impact factor: 2.395

4.  Bacterial diversity and activity along a salinity gradient in soda lakes of the Kulunda Steppe (Altai, Russia).

Authors:  Mirjam J Foti; Dimitry Yu Sorokin; Elena E Zacharova; Nicolai V Pimenov; J Gijs Kuenen; Gerard Muyzer
Journal:  Extremophiles       Date:  2007-11-08       Impact factor: 2.395

5.  Changes in the bacterial populations of the highly alkaline saline soil of the former lake Texcoco (Mexico) following flooding.

Authors:  César Valenzuela-Encinas; Isabel Neria-González; Rocio J Alcántara-Hernández; Isabel Estrada-Alvarado; Francisco Javier Zavala-Díaz de la Serna; Luc Dendooven; Rodolfo Marsch
Journal:  Extremophiles       Date:  2009-04-23       Impact factor: 2.395

6.  Phylogenetic and metabolic bacterial diversity of Phragmites australis periphyton communities in two Hungarian soda ponds.

Authors:  Anna Rusznyák; Péter Vladár; Gitta Szabó; Károly Márialigeti; Andrea K Borsodi
Journal:  Extremophiles       Date:  2008-08-05       Impact factor: 2.395

7.  Spatial and temporal patterns in the microbial diversity of a meromictic soda lake in Washington State.

Authors:  Pedro A Dimitriu; Holly C Pinkart; Brent M Peyton; Melanie R Mormile
Journal:  Appl Environ Microbiol       Date:  2008-06-13       Impact factor: 4.792

8.  Planktonic bacterial community composition of an extremely shallow soda pond during a phytoplankton bloom revealed by cultivation and molecular cloning.

Authors:  Andrea K Borsodi; Mónika Knáb; Katalin Czeibert; Károly Márialigeti; Lajos Vörös; Boglárka Somogyi
Journal:  Extremophiles       Date:  2013-04-23       Impact factor: 2.395

9.  Mechanism of TonB-dependent transport system in Halomonas alkalicola CICC 11012s in response to alkaline stress.

Authors:  Lei Zhai; Jiuyan Xie; Huijun Feng; Sijia Sun; Kun Cheng; Su Yao
Journal:  Extremophiles       Date:  2020-10-30       Impact factor: 2.395

10.  Genetic diversity of eukaryotic plankton assemblages in Eastern Tibetan Lakes differing by their salinity and altitude.

Authors:  Qinglong L Wu; Antonis Chatzinotas; Jianjun Wang; Jens Boenigk
Journal:  Microb Ecol       Date:  2009-05-16       Impact factor: 4.552

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