Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Atomic simulations of protein folding, using the replica exchange algorithm.

Literature DB >> 15063649

Atomic simulations of protein folding, using the replica exchange algorithm.

Hugh Nymeyer¹, S Gnanakaran, Angel E García.

Abstract

Year: 2004 PMID： 15063649 DOI： 10.1016/S0076-6879(04)83006-4

Source DB: PubMed Journal: Methods Enzymol ISSN： 0076-6879 Impact factor: 1.600

Keyword Cloud
Cited

× No keyword cloud information.

40 in total

1. Molecular simulation uncovers the conformational space of the λ Cro dimer in solution.

Authors: Logan S Ahlstrom; Osamu Miyashita
Journal: Biophys J Date: 2011-11-15 Impact factor: 4.033

2. Analysis of the bacterial luciferase mobile loop by replica-exchange molecular dynamics.

Authors: Zachary T Campbell; Thomas O Baldwin; Osamu Miyashita
Journal: Biophys J Date: 2010-12-15 Impact factor: 4.033

3. Greedy replica exchange algorithm for heterogeneous computing grids.

Authors: Christopher Lockhart; James O'Connor; Steven Armentrout; Dmitri K Klimov
Journal: J Mol Model Date: 2015-08-27 Impact factor: 1.810

4. Simulations of the pressure and temperature unfolding of an alpha-helical peptide.

Authors: Dietmar Paschek; S Gnanakaran; Angel E Garcia
Journal: Proc Natl Acad Sci U S A Date: 2005-03-30 Impact factor: 11.205

5. Amyloid beta-protein monomer structure: a computational and experimental study.

Authors: Andrij Baumketner; Summer L Bernstein; Thomas Wyttenbach; Gal Bitan; David B Teplow; Michael T Bowers; Joan-Emma Shea
Journal: Protein Sci Date: 2006-03 Impact factor: 6.725

6. Conformational equilibrium of cytochrome P450 BM-3 complexed with N-palmitoylglycine: a replica exchange molecular dynamics study.

Authors: Krishna Pratap Ravindranathan; Emilio Gallicchio; Richard A Friesner; Ann E McDermott; Ronald M Levy
Journal: J Am Chem Soc Date: 2006-05-03 Impact factor: 15.419

Atomic simulations of protein folding, using the replica exchange algorithm.

1. Molecular simulation uncovers the conformational space of the λ Cro dimer in solution.

2. Analysis of the bacterial luciferase mobile loop by replica-exchange molecular dynamics.

3. Greedy replica exchange algorithm for heterogeneous computing grids.

4. Simulations of the pressure and temperature unfolding of an alpha-helical peptide.

5. Amyloid beta-protein monomer structure: a computational and experimental study.

6. Conformational equilibrium of cytochrome P450 BM-3 complexed with N-palmitoylglycine: a replica exchange molecular dynamics study.

7. Packing interface energetics in different crystal forms of the λ Cro dimer.

8. Network visualization of conformational sampling during molecular dynamics simulation.

9. Asynchronous replica exchange for molecular simulations.

10. Stochastic gating and drug-ribosome interactions.