Literature DB >> 15063648

Poisson-Boltzmann methods for biomolecular electrostatics.

Nathan A Baker1.   

Abstract

Year:  2004        PMID： 15063648     DOI： 10.1016/S0076-6879(04)83005-2

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  64 in total

1.  AFMPB: An Adaptive Fast Multipole Poisson-Boltzmann Solver for Calculating Electrostatics in Biomolecular Systems.

Authors:  Benzhuo Lu; Xiaolin Cheng; Jingfang Huang; J Andrew McCammon
Journal:  Comput Phys Commun       Date:  2010-06-01       Impact factor: 4.390

2.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

3.  PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.

Authors:  Todd J Dolinsky; Jens E Nielsen; J Andrew McCammon; Nathan A Baker
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach.

Authors:  Hin Hark Gan; Tamar Schlick
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

5.  New Versions of Image Approximations to the Ionic Solvent Induced Reaction Field.

Authors:  Changfeng Xue; Shaozhong Deng
Journal:  Comput Phys Commun       Date:  2008-02-01       Impact factor: 4.390

6.  A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.

Authors:  Hui Sun; Jiayi Wen; Yanxiang Zhao; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

7.  Polarizable Atomic Multipole Solutes in a Generalized Kirkwood Continuum.

Authors:  Michael J Schnieders; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

8.  The Role of Correlation and Solvation in Ion Interactions with B-DNA.

Authors:  Maria L Sushko; Dennis G Thomas; Suzette A Pabit; Lois Pollack; Alexey V Onufriev; Nathan A Baker
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

9.  DelPhi Web Server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes.

Authors:  Subhra Sarkar; Shawn Witham; Jie Zhang; Maxim Zhenirovskyy; Walter Rocchia; Emil Alexov
Journal:  Commun Comput Phys       Date:  2013-01       Impact factor: 3.246

10.  Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements.

Authors:  Michael D Altman; Jaydeep P Bardhan; Jacob K White; Bruce Tidor
Journal:  J Comput Chem       Date:  2009-01-15       Impact factor: 3.376
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