Literature DB >> 15059813

AliasServer: a web server to handle multiple aliases used to refer to proteins.

Florian Iragne1, Aurélien Barré, Nicolas Goffard, Antoine De Daruvar.   

Abstract

UNLABELLED: AliasServer provides services that facilitate the assembly of data or datasets that make use of different identifiers for refering to the same protein. This resource relies on a database which contains, for a given organism, a non-redundant list of protein sequences associated with a set of aliases. AVAILABILITY: AliasServer is available as an interactive Web server at http://cbi.labri.fr/outils/alias/ and as a web service using a SOAP interface. The complete tool, including sources and data, is available for local installations upon request. SUPPLEMENTARY INFORMATION: Technical documentation is available at http://cbi.labri.fr/outils/alias/asdoc.pdf

Mesh:

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Year:  2004        PMID: 15059813     DOI: 10.1093/bioinformatics/bth241

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  16 in total

1.  New strategy for the representation and the integration of biomolecular knowledge at a cellular scale.

Authors:  Roland Barriot; Jérôme Poix; Alexis Groppi; Aurélien Barré; Nicolas Goffard; David Sherman; Isabelle Dutour; Antoine de Daruvar
Journal:  Nucleic Acids Res       Date:  2004-07-07       Impact factor: 16.971

2.  High-throughput discovery and characterization of fetal protein trafficking in the blood of pregnant women.

Authors:  Jill L Maron; Gil Alterovitz; Marco Ramoni; Kirby L Johnson; Diana W Bianchi
Journal:  Proteomics Clin Appl       Date:  2009-12       Impact factor: 3.494

Review 3.  Data integration for dynamic and sustainable systems biology resources: challenges and lessons learned.

Authors:  Daniel E Sullivan; Joseph L Gabbard; Maulik Shukla; Bruno Sobral
Journal:  Chem Biodivers       Date:  2010-05       Impact factor: 2.408

4.  Booly: a new data integration platform.

Authors:  Long H Do; Francisco F Esteves; Harvey J Karten; Ethan Bier
Journal:  BMC Bioinformatics       Date:  2010-10-13       Impact factor: 3.169

5.  The Booly aliasing resource: a database of grouped biological identifiers.

Authors:  Long Hoang Do; Ethan Bier
Journal:  Bioinformation       Date:  2011-03-26

6.  The Synergizer service for translating gene, protein and other biological identifiers.

Authors:  Gabriel F Berriz; Frederick P Roth
Journal:  Bioinformatics       Date:  2008-08-12       Impact factor: 6.937

7.  cPath: open source software for collecting, storing, and querying biological pathways.

Authors:  Ethan G Cerami; Gary D Bader; Benjamin E Gross; Chris Sander
Journal:  BMC Bioinformatics       Date:  2006-11-13       Impact factor: 3.169

8.  The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.

Authors:  Martijn P van Iersel; Alexander R Pico; Thomas Kelder; Jianjiong Gao; Isaac Ho; Kristina Hanspers; Bruce R Conklin; Chris T Evelo
Journal:  BMC Bioinformatics       Date:  2010-01-04       Impact factor: 3.169

9.  AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Authors:  Fahim Mohammad; Robert M Flight; Benjamin J Harrison; Jeffrey C Petruska; Eric C Rouchka
Journal:  BMC Bioinformatics       Date:  2012-09-12       Impact factor: 3.169

10.  DAVID gene ID conversion tool.

Authors:  Da Wei Huang; Brad T Sherman; Robert Stephens; Michael W Baseler; H Clifford Lane; Richard A Lempicki
Journal:  Bioinformation       Date:  2008-07-30
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