Literature DB >> 15059658

Structural dynamics of myoglobin: an infrared kinetic study of ligand migration in mutants YQR and YQRF.

Don C Lamb1, Alessandro Arcovito, Karin Nienhaus, Oleksandr Minkow, Federica Draghi, Maurizio Brunori, G Ulrich Nienhaus.   

Abstract

Recombination of carbon monoxide to myoglobin mutants YQR and YQRF was studied using transient infrared absorption spectroscopy and Fourier transform infrared-temperature derivative spectroscopy (FTIR-TDS). Photoproduct states B, C', C" and D associated with ligands residing in different protein cavities have been identified. After photolysis, ligands migrate to primary docking site B and subsequently rebind or escape to a secondary site (C) within the Xe4 cavity. For YQR, a global analysis of the isothermal rebinding kinetics below 160 K and the TDS data reveal a correlation between the enthalpy barriers governing the two processes. Above 120 K, a protein conformational change in both YQR and YQRF converts photoproduct C' into C" with markedly slowed kinetics. Above approximately 180 K, ligands migrate to the proximal Xe1 site (D) and also exit into the solvent, from where they rebind in a bimolecular reaction.

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Year:  2004        PMID: 15059658     DOI: 10.1016/j.bpc.2003.10.002

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  7 in total

1.  Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry.

Authors:  Prem P Chapagain; Chola K Regmi; William Castillo
Journal:  J Chem Phys       Date:  2011-12-21       Impact factor: 3.488

Review 2.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

3.  Transient ligand docking sites in Cerebratulus lacteus mini-hemoglobin.

Authors:  Pengchi Deng; Karin Nienhaus; Pasquale Palladino; John S Olson; George Blouin; Luc Moens; Sylvia Dewilde; Eva Geuens; G Ulrich Nienhaus
Journal:  Gene       Date:  2007-04-29       Impact factor: 3.688

4.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

5.  Protein collective motions coupled to ligand migration in myoglobin.

Authors:  Yasutaka Nishihara; Shigeki Kato; Shigehiko Hayashi
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

6.  Theoretical characterization of carbon monoxide vibrational spectrum in sperm whale myoglobin distal pocket.

Authors:  Massimiliano Anselmi; Massimiliano Aschi; Alfredo Di Nola; Andrea Amadei
Journal:  Biophys J       Date:  2007-02-16       Impact factor: 4.033

7.  Exploring the diffusion of molecular oxygen in the red fluorescent protein mCherry using explicit oxygen molecular dynamics simulations.

Authors:  Chola K Regmi; Yuba R Bhandari; Bernard S Gerstman; Prem P Chapagain
Journal:  J Phys Chem B       Date:  2013-02-14       Impact factor: 2.991

  7 in total

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