Literature DB >> 15055394

A percolation approach to neural morphometry and connectivity.

Luciano da Fontoura Costa1, Edson Tadeu Monteiro Manoel.   

Abstract

This article addresses the issues of neural shape characterization and analysis from the perspective of one of the main roles played by neural shapes, namely, connectivity. This study is oriented toward the geometry at the individual cell level and involves the use of the percolation concept from statistical mechanics, which is reviewed in an accessible fashion. The characterization of the neural cell geometry with respect to connectivity is performed in terms of critical percolation probability obtained experimentally while considering several types of geometrical interactions between cells, therefore directly expressing the potential for connections defined by each situation. Two basic situations are considered: dendrite-dendrite and dendrite-axon interactions. The obtained results corroborate the potential of the critical percolation probability as a valuable resource for characterizing, classifying, and analyzing the morphology of neural cells.

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Year:  2003        PMID: 15055394     DOI: 10.1385/ni:1:1:065

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  19 in total

1.  Geometry and structural plasticity of synaptic connectivity.

Authors:  Armen Stepanyants; Patrick R Hof; Dmitri B Chklovskii
Journal:  Neuron       Date:  2002-04-11       Impact factor: 17.173

2.  Propagation of action potentials in dendrites depends on dendritic morphology.

Authors:  P Vetter; A Roth; M Häusser
Journal:  J Neurophysiol       Date:  2001-02       Impact factor: 2.714

3.  Influence of dendritic structure on firing pattern in model neocortical neurons.

Authors:  Z F Mainen; T J Sejnowski
Journal:  Nature       Date:  1996-07-25       Impact factor: 49.962

4.  Depolarization stimulates lamellipodia formation and axonal but not dendritic branching in cultured rat cerebral cortex neurons.

Authors:  G J Ramakers; J Winter; T M Hoogland; M B Lequin; P van Hulten; J van Pelt; C W Pool
Journal:  Brain Res Dev Brain Res       Date:  1998-06-15

5.  Automatic characterization and classification of ganglion cells from the salamander retina.

Authors:  L da F Costa; T J Velte
Journal:  J Comp Neurol       Date:  1999-02-01       Impact factor: 3.215

6.  Percolation properties of random ellipses.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-01

7.  Morphology and mosaic of on- and off-beta cells in the cat retina and some functional considerations.

Authors:  H Wässle; B B Boycott; R B Illing
Journal:  Proc R Soc Lond B Biol Sci       Date:  1981-05-22

Review 8.  From contact to connection: early events during synaptogenesis.

Authors:  P G Haydon; P Drapeau
Journal:  Trends Neurosci       Date:  1995-04       Impact factor: 13.837

9.  The connectivity of the brain: multi-level quantitative analysis.

Authors:  J M Murre; D P Sturdy
Journal:  Biol Cybern       Date:  1995-11       Impact factor: 2.086

10.  Morphology of ganglion cells in the neotenous tiger salamander retina.

Authors:  C B Toris; J L Eiesland; R F Miller
Journal:  J Comp Neurol       Date:  1995-02-20       Impact factor: 3.215

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  5 in total

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Authors:  Duncan E Donohue; Giorgio A Ascoli
Journal:  J Comput Neurosci       Date:  2005-10       Impact factor: 1.621

Review 2.  Successes and rewards in sharing digital reconstructions of neuronal morphology.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2007

3.  The tree-edit-distance, a measure for quantifying neuronal morphology.

Authors:  Holger Heumann; Gabriel Wittum
Journal:  Neuroinformatics       Date:  2009-05-28

4.  Classification of HIV-1-mediated neuronal dendritic and synaptic damage using multiple criteria linear programming.

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5.  An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies.

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Journal:  Front Comput Neurosci       Date:  2010-11-29       Impact factor: 2.380

  5 in total

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