Literature DB >> 15053481

A PCR-based assay to detect hAT-like transposon sequences in plants.

P De Keukeleire1, S De Schepper, J Gielis, T Gerats.   

Abstract

Despite their potential as endogenous tools for forward and reverse genetics, members of the hobo, Ac, Tam3 (or hAT) superfamily of transposable elements have been characterized in but a limited number of plant species. To expedite their isolation, we developed a PCR-based assay for the detection of hAT-like transposon sequences in plants which was applied to isolate and initially characterize such sequences from Petunia hybrida, Phaseolus vulgaris, Bambusa vulgaris, Brassica napus and Rhododendron simsii.

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Year:  2004        PMID： 15053481     DOI： 10.1023/b:chro.0000013163.34505.96

Source DB:  PubMed          Journal:  Chromosome Res        ISSN： 0967-3849            Impact factor:   4.620


  30 in total

1.  DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.

Authors:  B Morgenstern
Journal:  Bioinformatics       Date:  1999-03       Impact factor: 6.937

2.  Structure and evolution of the hAT transposon superfamily.

Authors:  E Rubin; G Lithwick; A A Levy
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

3.  Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize.

Authors:  R Hehl; W K Nacken; A Krause; H Saedler; H Sommer
Journal:  Plant Mol Biol       Date:  1991-02       Impact factor: 4.076

4.  Comparison of DNA sequences with protein sequences.

Authors:  W R Pearson; T Wood; Z Zhang; W Miller
Journal:  Genomics       Date:  1997-11-15       Impact factor: 5.736

5.  The Australian bushfly Musca vetustissima contains a sequence related to transposons of the hobo, Ac and Tam3 family.

Authors:  W D Warren; P W Atkinson; D A O'Brochta
Journal:  Gene       Date:  1995-02-27       Impact factor: 3.688

6.  The hobo transposable element excises and has related elements in tephritid species.

Authors:  A M Handler; S P Gomez
Journal:  Genetics       Date:  1996-07       Impact factor: 4.562

7.  Tam3 in Antirrhinum majus is exceptional transposon in resistant to alteration by abortive gap repair: identification of nested transposons.

Authors:  S Yamashita; T Mikami; Y Kishima
Journal:  Mol Gen Genet       Date:  1998-09

8.  The hobo transposable element of Drosophila can be cross-mobilized in houseflies and excises like the Ac element of maize.

Authors:  P W Atkinson; W D Warren; D A O'Brochta
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

9.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

10.  Transposable elements in lepidoptera: hobo-like transposons in Heliothis virescens and Helicoverpa zea.

Authors:  J D DeVault; S K Narang
Journal:  Biochem Biophys Res Commun       Date:  1994-08-30       Impact factor: 3.575
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  4 in total

1.  Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

Authors:  Tomas Cermak; Zdenek Kubat; Roman Hobza; Andrea Koblizkova; Alex Widmer; Jiri Macas; Boris Vyskot; Eduard Kejnovsky
Journal:  Chromosome Res       Date:  2008-10-15       Impact factor: 5.239

Review 2.  Limitations, progress and prospects of application of biotechnological tools in improvement of bamboo-a plant with extraordinary qualities.

Authors:  Sharbati R Singh; Rohtas Singh; Sanjay Kalia; Sunita Dalal; A K Dhawan; Rajwant K Kalia
Journal:  Physiol Mol Biol Plants       Date:  2013-01

3.  Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.

Authors:  Gerhard Menzel; Carmen Krebs; Mercedes Diez; Daniela Holtgräwe; Bernd Weisshaar; André E Minoche; Juliane C Dohm; Heinz Himmelbauer; Thomas Schmidt
Journal:  Plant Mol Biol       Date:  2012-01-13       Impact factor: 4.076

4.  Genomic diversity of Ac-like transposable elements in sphaerococcum mutant forms of common wheat (Triticum aestivum L.) and triticale (X Triticosecale Witt.).

Authors:  Georgi Bonchev; Lubomir Stoilov; Zorniza Angelova; Sevdalin Georgiev
Journal:  J Appl Genet       Date:  2011-10-05       Impact factor: 3.240
  4 in total

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