Literature DB >> 15053325

BOX-pCR fingerprinting as a powerful tool to reveal synonymous names in the genus Streptomyces. Emended descriptions are proposed for the species Streptomyces cinereorectus, S. fradiae, S. tricolor, S. colombiensis, S. filamentosus, S. vinaceus and S. phaeopurpureus.

Benjamin Lanoot1, Marc Vancanneyt, Peter Dawyndt, Margo Cnockaert, Jianli Zhang, Ying Huang, Zhiheng Liu, Jean Swings.   

Abstract

The type strains of 451 validly described Streptomyces species were screened using the BOX-PCR fingerprint technique. Of the different primers tested, the BOX primer yielded the most robust and reproducible band patterns. The majority of the species (350) had an unique pattern each. A total number of 30 clusters were delineated comprising species with nearly identical patterns. Four of these clusters grouped synonymous Streptomyces species known from previous studies. A high correlation exists between BOX-PCR fingerprinting and DNA-DNA homology data. In the present study, the latter was confirmed for 7 additional BOX clusters and led to the following emended descriptions: S. cochleatus is a subjective synonym of S. cinereorectus, S. roseoflavus of S. fradiae, S. roseodiastaticus of S. tricolor, S. roseosporus of S. filamentosus, S. distallicus of S. colombiensis, S. arabicus of S. vinaceus and S. phaeoviridis of S. phaeopurpureus. Although not yet confirmed by DNA-DNA pairing studies, rep-PCR data suggested the presence of at least 33 additional junior synonyms.

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Year:  2004        PMID: 15053325     DOI: 10.1078/0723-2020-00257

Source DB:  PubMed          Journal:  Syst Appl Microbiol        ISSN: 0723-2020            Impact factor:   4.022


  16 in total

1.  Identifying producers of antibacterial compounds by screening for antibiotic resistance.

Authors:  Maulik N Thaker; Wenliang Wang; Peter Spanogiannopoulos; Nicholas Waglechner; Andrew M King; Ricardo Medina; Gerard D Wright
Journal:  Nat Biotechnol       Date:  2013-09-22       Impact factor: 54.908

2.  Antimicrobial potential and taxonomic investigation of piezotolerant Streptomyces sp. NIOT-Ch-40 isolated from deep-sea sediment.

Authors:  Vishnu Priya Padmanaban; Pankaj Verma; Srividhyalakshmi Venkatabaskaran; Thirupathi Keppayan; Dharani Gopal; Ashok Kumar Sekar; Kirubagaran Ramalingam
Journal:  World J Microbiol Biotechnol       Date:  2017-01-02       Impact factor: 3.312

3.  Genome-Based Taxonomic Classification of the Phylum Actinobacteria.

Authors:  Imen Nouioui; Lorena Carro; Marina García-López; Jan P Meier-Kolthoff; Tanja Woyke; Nikos C Kyrpides; Rüdiger Pukall; Hans-Peter Klenk; Michael Goodfellow; Markus Göker
Journal:  Front Microbiol       Date:  2018-08-22       Impact factor: 5.640

4.  Taxonomy, purification and chemical characterization of four bioactive compounds from new Streptomyces sp. TN256 strain.

Authors:  S Smaoui; F Mathieu; L Elleuch; Y Coppel; G Merlina; I Karray-Rebai; L Mellouli
Journal:  World J Microbiol Biotechnol       Date:  2011-09-14       Impact factor: 3.312

5.  Antibiotic resistance-mediated isolation of scaffold-specific natural product producers.

Authors:  Maulik N Thaker; Nicholas Waglechner; Gerry D Wright
Journal:  Nat Protoc       Date:  2014-05-29       Impact factor: 13.491

6.  Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench.

Authors:  Wasu Pathom-Aree; James E M Stach; Alan C Ward; Koki Horikoshi; Alan T Bull; Michael Goodfellow
Journal:  Extremophiles       Date:  2006-03-15       Impact factor: 2.395

7.  Diversity of endophytic enterobacteria associated with different host plants.

Authors:  Adalgisa Ribeiro Torres; Welington Luiz Araújo; Luciana Cursino; Mariangela Hungria; Fábio Plotegher; Fábio Luís Mostasso; João Lúcio Azevedo
Journal:  J Microbiol       Date:  2008-08-31       Impact factor: 3.422

8.  Lactobacillus spp. associated with early childhood caries.

Authors:  P Svec; I Sedlácek; L Zácková; D Nováková; M Kukletová
Journal:  Folia Microbiol (Praha)       Date:  2009-03-29       Impact factor: 2.099

9.  In Vitro and In Vivo Plant Growth Promoting Activities and DNA Fingerprinting of Antagonistic Endophytic Actinomycetes Associates with Medicinal Plants.

Authors:  Ajit Kumar Passari; Vineet Kumar Mishra; Vijai Kumar Gupta; Mukesh Kumar Yadav; Ratul Saikia; Bhim Pratap Singh
Journal:  PLoS One       Date:  2015-09-30       Impact factor: 3.240

10.  Evolution of cyclizing 5-aminolevulinate synthases in the biosynthesis of actinomycete secondary metabolites: outcomes for genetic screening techniques.

Authors:  Kateřina Petříčková; Alica Chroňáková; Tomáš Zelenka; Tomáš Chrudimský; Stanislav Pospíšil; Miroslav Petříček; Václav Krištůfek
Journal:  Front Microbiol       Date:  2015-08-05       Impact factor: 5.640

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