Literature DB >> 15051892

Models of granulocyte DNA structure are highly predictive of myelodysplastic syndrome.

Donald C Malins1, Katie M Anderson, Nayak L Polissar, Gary K Ostrander, Edward T Knobbe, Virginia M Green, Naomi K Gilman, Jerry L Spivak.   

Abstract

We have used statistical models based on Fourier transform-infrared spectra to differentiate between the DNA structure of normal granulocytes and those obtained from patients with myelodysplastic syndrome (MDS). The substantial degree of discrimination achieved between the two DNA groups is attributed to differences in the nucleotide base and backbone structures. These structural differences allowed for the development of a discriminant analysis model that predicted, with high sensitivity and specificity, which DNA came from normal granulocytes vs. granulocytes from MDS patients. The findings are a promising basis for developing a blood test to diagnose and predict the occurrence of MDS, for which there is currently a paucity of molecular markers.

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Year:  2004        PMID: 15051892      PMCID: PMC387364          DOI: 10.1073/pnas.0400838101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Single 8-oxo-guanine and 8-oxo-adenine lesions induce marked changes in the backbone structure of a 25-base DNA strand.

Authors:  D C Malins; N L Polissar; G K Ostrander; M A Vinson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

2.  Factors critical to the design and execution of epidemiologic studies and description of an innovative technology to follow the progression from normal to cancer tissue.

Authors:  M Garcia-Closas; S E Hankinson; S Ho; D C Malins; N L Polissar; S N Schaefer; Y Su; M A Vinson
Journal:  J Natl Cancer Inst Monogr       Date:  2000

3.  Cytosine methylation enhances mitoxantrone-DNA adduct formation at CpG dinucleotides.

Authors:  B S Parker; S M Cutts; D R Phillips
Journal:  J Biol Chem       Date:  2001-02-13       Impact factor: 5.157

4.  A new structural analysis of DNA using statistical models of infrared spectra.

Authors:  D C Malins; N L Polissar; Y Su; H S Gardner; S J Gunselman
Journal:  Nat Med       Date:  1997-08       Impact factor: 53.440

Review 5.  DNA methylation and the association between genetic and epigenetic changes: relation to carcinogenesis.

Authors:  J T Wachsman
Journal:  Mutat Res       Date:  1997-04-14       Impact factor: 2.433

6.  Methylation of the p15(INK4B) gene in myelodysplastic syndrome: it can be detected early at diagnosis or during disease progression and is highly associated with leukaemic transformation.

Authors:  H F Tien; J H Tang; W Tsay; M C Liu; F Y Lee; C H Wang; Y C Chen; M C Shen
Journal:  Br J Haematol       Date:  2001-01       Impact factor: 6.998

7.  Methylation profiling in acute myeloid leukemia.

Authors:  M Toyota; K J Kopecky; M O Toyota; K W Jair; C L Willman; J P Issa
Journal:  Blood       Date:  2001-05-01       Impact factor: 22.113

8.  Myelodysplastic syndromes, from French-American-British to World Health Organization: comparison of classifications on 431 unselected patients from a single institution.

Authors:  T Nösslinger; R Reisner; E Koller; H Grüner; H Tüchler; H Nowotny; E Pittermann; M Pfeilstöcker
Journal:  Blood       Date:  2001-11-15       Impact factor: 22.113

9.  Validation of the WHO proposals for a new classification of primary myelodysplastic syndromes: a retrospective analysis of 1600 patients.

Authors:  U Germing; N Gattermann; C Strupp; M Aivado; C Aul
Journal:  Leuk Res       Date:  2000-12       Impact factor: 3.156

Review 10.  Targeting hypomethylation of DNA to achieve cellular differentiation in myelodysplastic syndromes (MDS).

Authors:  L R Silverman
Journal:  Oncologist       Date:  2001
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  3 in total

1.  A cancer DNA phenotype in healthy prostates, conserved in tumors and adjacent normal cells, implies a relationship to carcinogenesis.

Authors:  Donald C Malins; Naomi K Gilman; Virginia M Green; Thomas M Wheeler; Edward A Barker; Katie M Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-16       Impact factor: 11.205

2.  Development of a cancer DNA phenotype prior to tumor formation.

Authors:  Donald C Malins; Katie M Anderson; Naomi K Gilman; Virginia M Green; Edward A Barker; Karl Erik Hellström
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-12       Impact factor: 11.205

3.  Metastatic cancer DNA phenotype identified in normal tissues surrounding metastasizing prostate carcinomas.

Authors:  Donald C Malins; Naomi K Gilman; Virginia M Green; Thomas M Wheeler; Edward A Barker; Mark A Vinson; Mohammad Sayeeduddin; Karl Erik Hellström; Katie M Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-27       Impact factor: 11.205

  3 in total

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