Literature DB >> 15046593

Metagenomics, gene discovery and the ideal biocatalyst.

D A Cowan1, A Arslanoglu, S G Burton, G C Baker, R A Cameron, J J Smith, Q Meyer.   

Abstract

With the rapid development of powerful protein evolution and enzyme-screening technologies, there is a growing belief that optimum conditions for biotransformation processes can be established without the constraints of the properties of the biocatalyst. These technologies can then be applied to find the "ideal biocatalyst" for the process. In identifying the ideal biocatalyst, the processes of gene discovery and enzyme evolution play major roles. However, in order to expand the pool genes for in vitro evolution, new technologies, which circumvent the limitations of microbial culturability, must be applied. These technologies, which currently include metagenomic library screening, gene-specific amplification methods and even full metagenomic sequencing, provide access to a volume of "sequence space" that is not addressed by traditional screening.

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Year:  2004        PMID: 15046593     DOI: 10.1042/bst0320298

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  7 in total

1.  Metagenomics: Future of microbial gene mining.

Authors:  J Vakhlu; Avneet Kour Sudan; B N Johri
Journal:  Indian J Microbiol       Date:  2008-07-27       Impact factor: 2.461

Review 2.  A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data.

Authors:  Despoina D Roumpeka; R John Wallace; Frank Escalettes; Ian Fotheringham; Mick Watson
Journal:  Front Genet       Date:  2017-03-06       Impact factor: 4.599

Review 3.  Marine Metagenome as A Resource for Novel Enzymes.

Authors:  Amani D Alma'abadi; Takashi Gojobori; Katsuhiko Mineta
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-11-10       Impact factor: 7.691

4.  Meta4: a web application for sharing and annotating metagenomic gene predictions using web services.

Authors:  Emily J Richardson; Franck Escalettes; Ian Fotheringham; Robert J Wallace; Mick Watson
Journal:  Front Genet       Date:  2013-09-05       Impact factor: 4.599

Review 5.  Integrated (Meta) Genomic and Synthetic Biology Approaches to Develop New Biocatalysts.

Authors:  María L Parages; José A Gutiérrez-Barranquero; F Jerry Reen; Alan D W Dobson; Fergal O'Gara
Journal:  Mar Drugs       Date:  2016-03-21       Impact factor: 5.118

6.  Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery.

Authors:  Robert D Stewart; Marc D Auffret; Amanda Warr; Alan W Walker; Rainer Roehe; Mick Watson
Journal:  Nat Biotechnol       Date:  2019-08-02       Impact factor: 54.908

7.  Metagenomics for taxonomy profiling: tools and approaches.

Authors:  Mukesh Kumar Awasthi; B Ravindran; Surendra Sarsaiya; Hongyu Chen; Steven Wainaina; Ekta Singh; Tao Liu; Sunil Kumar; Ashok Pandey; Lal Singh; Zengqiang Zhang
Journal:  Bioengineered       Date:  2020-12       Impact factor: 6.832

  7 in total

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