Literature DB >> 15044238

A tool for gene expression based PubMed search through combining data sources.

Maksym Korotkiy1, Rutger Middelburg, Henk Dekker, Frank van Harmelen, Jan Lankelma.   

Abstract

UNLABELLED: We present a new tool for the semi-automated querying of PubMed using a batch of tens to thousands of GenBank accession numbers or UniGene cluster ids. By combining information from UniGene and SWISS-PROT, microGENIE obtains information on the biological relevance of expressed genes, as identified by micro-array experiments, with minimal user intervention and time investment. AVAILABILITY: microGENIE is freely available from http://www.cs.vu.nl/microgenie SUPPLEMENTARY INFORMATION: The web site above supplies examples of input and output files.

Mesh:

Year:  2004        PMID: 15044238     DOI: 10.1093/bioinformatics/bth183

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  Concept-based query expansion for retrieving gene related publications from MEDLINE.

Authors:  Sérgio Matos; Joel P Arrais; João Maia-Rodrigues; José Luis Oliveira
Journal:  BMC Bioinformatics       Date:  2010-04-28       Impact factor: 3.169

2.  MILANO--custom annotation of microarray results using automatic literature searches.

Authors:  Ran Rubinstein; Itamar Simon
Journal:  BMC Bioinformatics       Date:  2005-01-20       Impact factor: 3.169

  2 in total

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