Literature DB >> 15044236

ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure.

R H Higa1, A J Montagner, R C Togawa, P R Kuser, M E B Yamagishi, A L Mancini, G Pappas, R T Miura, L G Horita, G Neshich.   

Abstract

SUMMARY: A web-based application to analyze protein amino acids conservation-Consensus Sequence (ConSSeq) is presented. ConSSeq graphically represents information about amino acid conservation based on sequence alignments reported in homology-derived structures of proteins. Beyond the relative entropy for each position in the alignment, ConSSeq also presents the consensus sequence and information about the amino acids, which are predominant at each position of the alignment. ConSSeq is part of the STING Millennium Suite and is implemented as a Java Applet. AVAILABILITY: http://sms.cbi.cnptia.embrapa.br/SMS/STINGm/consseq/, http://trantor.bioc.columbia.edu/SMS/STINGm/consseq/, http://mirrors.rcsb.org//SMS/STINGm/consseq/, http://www.es.embnet.org/SMS/STINGm/consseq/ and http://www.ar.embnet.org/SMS/STINGm/consseq/

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Year:  2004        PMID： 15044236     DOI： 10.1093/bioinformatics/bth185

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  Single nucleotide polymorphisms identification in expressed genes of Schistosoma mansoni.

Authors:  Mariana Simões; Diana Bahia; Adhemar Zerlotini; Kleider Torres; François Artiguenave; Goran Neshich; Paula Kuser; Guilherme Oliveira
Journal:  Mol Biochem Parasitol       Date:  2007-04-13       Impact factor: 1.759

2.  The Diamond STING server.

Authors:  Goran Neshich; Luiz C Borro; Roberto H Higa; Paula R Kuser; Michel E B Yamagishi; Eduardo H Franco; Joao N Krauchenco; Renato Fileto; André A Ribeiro; George B P Bezerra; Thiago M Velludo; Tomás S Jimenez; Noboru Furukawa; Hirofumi Teshima; Koji Kitajima; Abdulla Bava; Akinori Sarai; Roberto C Togawa; Adauto L Mancini
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

3.  STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database.

Authors:  Goran Neshich; Adauto L Mancini; Michel E B Yamagishi; Paula R Kuser; Renato Fileto; Ivan P Pinto; Juliana F Palandrani; João N Krauchenco; Christian Baudet; Arnaldo J Montagner; Roberto H Higa
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

4.  Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages.

Authors:  Fábio R de Moraes; Izabella A P Neshich; Ivan Mazoni; Inácio H Yano; José G C Pereira; José A Salim; José G Jardine; Goran Neshich
Journal:  PLoS One       Date:  2014-01-28       Impact factor: 3.240

5.  Flexible mapping of homology onto structure with homolmapper.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  BMC Bioinformatics       Date:  2007-04-11       Impact factor: 3.169
  5 in total

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