Literature DB >> 15044231

UniProt archive.

Rasko Leinonen1, Federico Garcia Diez, David Binns, Wolfgang Fleischmann, Rodrigo Lopez, Rolf Apweiler.   

Abstract

UniProt Archive (UniParc) is the most comprehensive, non-redundant protein sequence database available. Its protein sequences are retrieved from predominant, publicly accessible resources. All new and updated protein sequences are collected and loaded daily into UniParc for full coverage. To avoid redundancy, each unique sequence is stored only once with a stable protein identifier, which can be used later in UniParc to identify the same protein in all source databases. When proteins are loaded into the database, database cross-references are created to link them to the origins of the sequences. As a result, performing a sequence search against UniParc is equivalent to performing the same search against all databases cross-referenced by UniParc. UniParc contains only protein sequences and database cross-references; all other information must be retrieved from the source databases.

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Year:  2004        PMID: 15044231     DOI: 10.1093/bioinformatics/bth191

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  57 in total

1.  The annotation of full zinc proteomes.

Authors:  Ivano Bertini; Leonardo Decaria; Antonio Rosato
Journal:  J Biol Inorg Chem       Date:  2010-05-05       Impact factor: 3.358

Review 2.  In silico characterization of proteins: UniProt, InterPro and Integr8.

Authors:  Nicola Jane Mulder; Paul Kersey; Manuela Pruess; Rolf Apweiler
Journal:  Mol Biotechnol       Date:  2007-10-04       Impact factor: 2.695

Review 3.  Protein Bioinformatics Databases and Resources.

Authors:  Chuming Chen; Hongzhan Huang; Cathy H Wu
Journal:  Methods Mol Biol       Date:  2017

4.  Yeast Ste23p shares functional similarities with mammalian insulin-degrading enzymes.

Authors:  Benjamin J Alper; Jarrad W Rowse; Walter K Schmidt
Journal:  Yeast       Date:  2009-11       Impact factor: 3.239

5.  Evaluation of Long-Term Cryostorage of Brain Tissue Sections for Quantitative Histochemistry.

Authors:  Larissa I Estrada; Amy A Robinson; Ana C Amaral; Eustathia L Giannaris; Nadine C Heyworth; Farzad Mortazavi; Laura B Ngwenya; Debra E Roberts; Howard J Cabral; Ronald J Killiany; Douglas L Rosene
Journal:  J Histochem Cytochem       Date:  2017-01-12       Impact factor: 2.479

6.  CCRXP: exploring clusters of conserved residues in protein structures.

Authors:  Shandar Ahmad; Ozlem Keskin; Kenji Mizuguchi; Akinori Sarai; Ruth Nussinov
Journal:  Nucleic Acids Res       Date:  2010-05-10       Impact factor: 16.971

7.  Re-refinement from deposited X-ray data can deliver improved models for most PDB entries.

Authors:  Robbie P Joosten; Thomas Womack; Gert Vriend; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

8.  Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets.

Authors:  Peter B McGarvey; Hongzhan Huang; Raja Mazumder; Jian Zhang; Yongxing Chen; Chengdong Zhang; Stephen Cammer; Rebecca Will; Margie Odle; Bruno Sobral; Margaret Moore; Cathy H Wu
Journal:  PLoS One       Date:  2009-09-25       Impact factor: 3.240

9.  Covariation of branch lengths in phylogenies of functionally related genes.

Authors:  Wai Lok Sibon Li; Allen G Rodrigo
Journal:  PLoS One       Date:  2009-12-29       Impact factor: 3.240

10.  The Universal Protein Resource (UniProt) in 2010.

Authors: 
Journal:  Nucleic Acids Res       Date:  2009-10-20       Impact factor: 16.971

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