Literature DB >> 15042342

The shark HoxN cluster is homologous to the human HoxD cluster.

Sonja J Prohaska1, Claudia Fried, Chris T Amemiya, Frank H Ruddle, Günter P Wagner, Peter F Stadler.   

Abstract

The statistical analysis of phylogenetic footprints in the two known horn shark Hox clusters and the four mammalian clusters shows that the shark HoxN cluster is HoxD-like. This finding implies that the most recent common ancestor of jawed vertebrates had at least four Hox clusters, including those which are orthologous to the four mammalian Hox clusters.

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Year:  2004        PMID: 15042342     DOI: 10.1007/s00239-003-2545-z

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  19 in total

1.  Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

Authors:  Sonja J Prohaska; Claudia Fried; Christoph Flamm; Günter P Wagner; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2004-05       Impact factor: 4.286

2.  An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships.

Authors:  K Sumiyama; C B Kim; F H Ruddle
Journal:  Genomics       Date:  2001-01-15       Impact factor: 5.736

Review 3.  Searching for regulatory elements in human noncoding sequences.

Authors:  L Duret; P Bucher
Journal:  Curr Opin Struct Biol       Date:  1997-06       Impact factor: 6.809

4.  Phylogenetic reconstruction of vertebrate Hox cluster duplications.

Authors:  W J Bailey; J Kim; G P Wagner; F H Ruddle
Journal:  Mol Biol Evol       Date:  1997-08       Impact factor: 16.240

5.  Two steps in the evolution of Antennapedia-class vertebrate homeobox genes.

Authors:  C Kappen; K Schughart; F H Ruddle
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.

Authors:  D A Tagle; B F Koop; M Goodman; J L Slightom; D L Hess; R T Jones
Journal:  J Mol Biol       Date:  1988-09-20       Impact factor: 5.469

8.  Gene duplications and the origins of vertebrate development.

Authors:  P W Holland; J Garcia-Fernàndez; N A Williams; A Sidow
Journal:  Dev Suppl       Date:  1994

Review 9.  Hox genes and chordate evolution.

Authors:  P W Holland; J Garcia-Fernàndez
Journal:  Dev Biol       Date:  1996-02-01       Impact factor: 3.582

10.  Archetypal organization of the amphioxus Hox gene cluster.

Authors:  J Garcia-Fernández; P W Holland
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

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  8 in total

1.  Inferring phylogenetic trees from the knowledge of rare evolutionary events.

Authors:  Marc Hellmuth; Maribel Hernandez-Rosales; Yangjing Long; Peter F Stadler
Journal:  J Math Biol       Date:  2017-12-07       Impact factor: 2.259

2.  Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.

Authors:  Chris T Amemiya; Thomas P Powers; Sonja J Prohaska; Jane Grimwood; Jeremy Schmutz; Mark Dickson; Tsutomu Miyake; Michael A Schoenborn; Richard M Myers; Francis H Ruddle; Peter F Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-05       Impact factor: 11.205

3.  The duplication of the Hox gene clusters in teleost fishes.

Authors:  Sonja J Prohaska; Peter F Stadler
Journal:  Theory Biosci       Date:  2004-06       Impact factor: 1.919

4.  Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha).

Authors:  Karen E Chambers; Ryan McDaniell; Jeremy D Raincrow; Maya Deshmukh; Peter F Stadler; Chi-hua Chiu
Journal:  Theory Biosci       Date:  2009-02-19       Impact factor: 1.919

5.  Evolution of the let-7 microRNA family.

Authors:  Jana Hertel; Sebastian Bartschat; Axel Wintsche; Christian Otto; Peter F Stadler
Journal:  RNA Biol       Date:  2012-03-01       Impact factor: 4.652

Review 6.  Hox gene clusters of early vertebrates: do they serve as reliable markers for genome evolution?

Authors:  Shigehiro Kuraku
Journal:  Genomics Proteomics Bioinformatics       Date:  2011-06       Impact factor: 7.691

7.  Biphasic Hoxd gene expression in shark paired fins reveals an ancient origin of the distal limb domain.

Authors:  Renata Freitas; GuangJun Zhang; Martin J Cohn
Journal:  PLoS One       Date:  2007-08-15       Impact factor: 3.240

8.  Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni.

Authors:  Simone Hoegg; Jeffrey L Boore; Jennifer V Kuehl; Axel Meyer
Journal:  BMC Genomics       Date:  2007-09-10       Impact factor: 3.969

  8 in total

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