Literature DB >> 15042336

Do avian mitochondria recombine?

Sofia Berlin1, Nick G C Smith, Hans Ellegren.   

Abstract

The dogma of strict maternal inheritance of mitochondria is now being tested with population genetics methods on sequence data from many species. In this study we investigated whether recombination occurs in the mitochondria of the blue tit ( Parus caeruleus) by studying polymorphisms in the mitochondrial control region and in a recently identified (A)(n) microsatellite on the W chromosome. The female heterogamety of avian sex chromosomes allows a test of whether mitochondrial recombination affects genealogical inference by comparison of mitochondrial and W-linked sequence variation. There is no discrepancy between mitochondrial and W-linked genealogies in blue tits, consistent with no recombination. We also analyzed mitochondrial sequence variation in both blue tits and peregrine falcons ( Falco peregrinus) using a coalescent-based approach which accounts for recurrent mutation; in neither bird species did we find evidence of recombination. We conclude that it is unlikely that mitochondrial recombination has large effects on mitochondrial genetic variability in birds.

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Year:  2004        PMID: 15042336     DOI: 10.1007/s00239-003-2537-z

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  21 in total

1.  The detection and measurement of recombination from sequence data.

Authors:  J M Smith
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

2.  DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.

Authors:  J Rozas; R Rozas
Journal:  Bioinformatics       Date:  1999-02       Impact factor: 6.937

3.  A coalescent-based method for detecting and estimating recombination from gene sequences.

Authors:  Gil McVean; Philip Awadalla; Paul Fearnhead
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

4.  Evolutionary genetics. Clonal inheritance of avian mitochondrial DNA.

Authors:  S Berlin; H Ellegren
Journal:  Nature       Date:  2001-09-06       Impact factor: 49.962

5.  Structure and evolution of the avian mitochondrial control region.

Authors:  Minna Ruokonen; Laura Kvist
Journal:  Mol Phylogenet Evol       Date:  2002-06       Impact factor: 4.286

6.  Isolation and characterization of microsatellite loci in a Phylloscopus warbler.

Authors:  S Bensch; T Price; J Kohn
Journal:  Mol Ecol       Date:  1997-01       Impact factor: 6.185

7.  Statistical properties of the number of recombination events in the history of a sample of DNA sequences.

Authors:  R R Hudson; N L Kaplan
Journal:  Genetics       Date:  1985-09       Impact factor: 4.562

8.  How clonal are human mitochondria?

Authors:  A Eyre-Walker; N H Smith; J M Smith
Journal:  Proc Biol Sci       Date:  1999-03-07       Impact factor: 5.349

Review 9.  What do patterns of genetic variability reveal about mitochondrial recombination?

Authors:  G A McVean
Journal:  Heredity (Edinb)       Date:  2001-12       Impact factor: 3.821

10.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors:  K Tamura; M Nei
Journal:  Mol Biol Evol       Date:  1993-05       Impact factor: 16.240

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  5 in total

Review 1.  Mechanism of homologous recombination and implications for aging-related deletions in mitochondrial DNA.

Authors:  Xin Jie Chen
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

2.  Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix.

Authors:  Rebecca T Kimball; Edward L Braun
Journal:  PeerJ       Date:  2014-04-22       Impact factor: 2.984

3.  Selections that isolate recombinant mitochondrial genomes in animals.

Authors:  Hansong Ma; Patrick H O'Farrell
Journal:  Elife       Date:  2015-08-03       Impact factor: 8.140

4.  Extreme variation in patterns of tandem repeats in mitochondrial control region of yellow-browed tits (Sylviparus modestus, Paridae).

Authors:  Xiaoyang Wang; Nian Liu; Hongli Zhang; Xiao-Jun Yang; Yuan Huang; Fumin Lei
Journal:  Sci Rep       Date:  2015-08-19       Impact factor: 4.379

5.  Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa.

Authors:  Zhiqiang Ye; Chaoxian Zhao; R Taylor Raborn; Man Lin; Wen Wei; Yue Hao; Michael Lynch
Journal:  Mol Biol Evol       Date:  2022-04-11       Impact factor: 16.240

  5 in total

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