Literature DB >> 15039588

Structure of bovine carbonic anhydrase II at 1.95 A resolution.

Ryuta Saito1, Takao Sato, Atsushi Ikai, Nobuo Tanaka.   

Abstract

Carbonic anhydrase (CA) is a zinc-containing enzyme that catalyzes the reversible hydration of CO2 to HCO3-. In eukaryotes, the enzyme plays a role in various physiological functions, including interconversion between CO2 and HCO3- in intermediary metabolism, facilitated diffusion of CO2, pH homeostasis and ion transport. The structure of bovine carbonic anhydrase II (BCA II) has been determined by molecular replacement and refined to 1.95 A resolution by simulated-annealing and individual B-factor refinement. The final R factor for the BCA II structure was 19.4%. BCA II has a C-terminal knot structure similar to that observed in human CA II. It contains one zinc ion in the active site coordinated to three histidines and one putative water molecule in a tetrahedral geometry. The structure of BCA II reveals a probable alternative proton-wire pathway that differs from that of HCA II.

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Year:  2004        PMID: 15039588     DOI: 10.1107/S0907444904003166

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  44 in total

1.  Origin of mechanical strength of bovine carbonic anhydrase studied by molecular dynamics simulation.

Authors:  Satoko Ohta; Mohammad Taufiq Alam; Hideo Arakawa; Atsushi Ikai
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

2.  Vapor treatment of electrospray droplets: evidence for the folding of initially denatured proteins on the sub-millisecond time-scale.

Authors:  Anastasia Kharlamova; J Corinne DeMuth; Scott A McLuckey
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-21       Impact factor: 3.109

3.  Stimulus-responsive controlled release system by covalent immobilization of an enzyme into mesoporous silica nanoparticles.

Authors:  Jessica Méndez; Alina Monteagudo; Kai Griebenow
Journal:  Bioconjug Chem       Date:  2012-03-13       Impact factor: 4.774

4.  Standard Proteoforms and Their Complexes for Native Mass Spectrometry.

Authors:  Luis F Schachner; Ashley N Ives; John P McGee; Rafael D Melani; Jared O Kafader; Philip D Compton; Steven M Patrie; Neil L Kelleher
Journal:  J Am Soc Mass Spectrom       Date:  2019-04-08       Impact factor: 3.109

5.  Pretransition and progressive softening of bovine carbonic anhydrase II as probed by single molecule atomic force microscopy.

Authors:  Rehana Afrin; Mohammad T Alam; Atsushi Ikai
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

6.  Top-Down Mass Spectrometry of Supercharged Native Protein-Ligand Complexes.

Authors:  Sheng Yin; Joseph A Loo
Journal:  Int J Mass Spectrom       Date:  2011-03-01       Impact factor: 1.986

7.  Regulating enzymatic activity with a photoswitchable affinity label.

Authors:  Jessica H Harvey; Dirk Trauner
Journal:  Chembiochem       Date:  2008-01-25       Impact factor: 3.164

Review 8.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

9.  Nanobiomechanics of proteins and biomembrane.

Authors:  Atsushi Ikai
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-06-27       Impact factor: 6.237

10.  Using NMR Spectroscopy To Measure Protein Binding Capacity on Gold Nanoparticles.

Authors:  Y Randika Perera; Taylor M South; Alex C Hughes; Ashlyn N Parkhurst; Olivia C Williams; Mackenzie B Davidson; Chloe A Wilks; Debra A Mlsna; Nicholas C Fitzkee
Journal:  J Chem Educ       Date:  2020-01-21       Impact factor: 2.979

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