Literature DB >> 15038715

Molecular details of urease inhibition by boric acid: insights into the catalytic mechanism.

Stefano Benini1, Wojciech R Rypniewski, Keith S Wilson, Stefano Mangani, Stefano Ciurli.   

Abstract

The structure of the complex of urease, a Ni-containing metalloenzyme, with boric acid was determined at 2.10 A resolution. The complex shows the unprecedented binding mode of the competitive inhibitor to the dinuclear metal center, with the B(OH)3 molecule bridging the Ni ions and leaving in place the bridging hydroxide. Boric acid can be considered a substrate analogue of urea, and the structure supports the proposal that the Ni-bridging hydroxide acts as the nucleophile in the enzymatic process of urea hydrolysis.

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Year:  2004        PMID: 15038715     DOI: 10.1021/ja049618p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  Conformational change results in loss of enzymatic activity of jack bean urease on its interaction with silver nanoparticle.

Authors:  Shobana Ponnuvel; Balakumar Subramanian; Karthe Ponnuraj
Journal:  Protein J       Date:  2015-10       Impact factor: 2.371

2.  Structural and functional role of nickel ions in urease by molecular dynamics simulation.

Authors:  Jing Lv; Yongjun Jiang; Qingsen Yu; Shaoyong Lu
Journal:  J Biol Inorg Chem       Date:  2010-10-02       Impact factor: 3.358

3.  The crystal structure of Sporosarcina pasteurii urease in a complex with citrate provides new hints for inhibitor design.

Authors:  Stefano Benini; Paulina Kosikowska; Michele Cianci; Luca Mazzei; Antonio Gonzalez Vara; Łukasz Berlicki; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2013-02-15       Impact factor: 3.358

Review 4.  Mineralization and cementing properties of bio-carbonate cement, bio-phosphate cement, and bio-carbonate/phosphate cement: a review.

Authors:  Xiaoniu Yu; Jianguo Jiang
Journal:  Environ Sci Pollut Res Int       Date:  2018-06-14       Impact factor: 4.223

5.  Biology-oriented drug synthesis (BIODS), in vitro urease inhibitory activity, and in silico studies on ibuprofen derivatives.

Authors:  Faiza Seraj; Khalid Mohammed Khan; Ajmal Khan; Muhammad Ali; Ruqaiya Khalil; Zaheer Ul-Haq; Shehryar Hameed; Muhammad Taha; Uzma Salar; Shahnaz Perveen
Journal:  Mol Divers       Date:  2020-01-21       Impact factor: 2.943

6.  Fluoride inhibition of Sporosarcina pasteurii urease: structure and thermodynamics.

Authors:  Stefano Benini; Michele Cianci; Luca Mazzei; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2014-08-12       Impact factor: 3.358

7.  Catalyzed decomposition of urea. Molecular dynamics simulations of the binding of urea to urease.

Authors:  Guillermina Estiu; Kenneth M Merz
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

Review 8.  Nonredox nickel enzymes.

Authors:  Michael J Maroney; Stefano Ciurli
Journal:  Chem Rev       Date:  2013-12-26       Impact factor: 60.622

9.  Computational investigation of the oxidative deboronation of boroglycine, H2N-CH2-B(OH)2, Using H2O and H2O2.

Authors:  Joseph D Larkin; George D Markham; Matt Milkevitch; Bernard R Brooks; Charles W Bock
Journal:  J Phys Chem A       Date:  2009-10-15       Impact factor: 2.781

10.  Metal ions in biological catalysis: from enzyme databases to general principles.

Authors:  Claudia Andreini; Ivano Bertini; Gabriele Cavallaro; Gemma L Holliday; Janet M Thornton
Journal:  J Biol Inorg Chem       Date:  2008-07-05       Impact factor: 3.358

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