Literature DB >> 15036160

Protein sequence databases.

Rolf Apweiler1, Amos Bairoch, Cathy H Wu.   

Abstract

A variety of protein sequence databases exist, ranging from simple sequence repositories, which store data with little or no manual intervention in the creation of the records, to expertly curated universal databases that cover all species and in which the original sequence data are enhanced by the manual addition of further information in each sequence record. As the focus of researchers moves from the genome to the proteins encoded by it, these databases will play an even more important role as central comprehensive resources of protein information. Several the leading protein sequence databases are discussed here, with special emphasis on the databases now provided by the Universal Protein Knowledgebase (UniProt) consortium.

Mesh:

Year:  2004        PMID: 15036160     DOI: 10.1016/j.cbpa.2003.12.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  57 in total

1.  Structural characterization of plant defensin protein superfamily.

Authors:  Emma W Gachomo; Jose C Jimenez-Lopez; Adéchola Pierre Polycarpe Kayodé; Lamine Baba-Moussa; Simeon O Kotchoni
Journal:  Mol Biol Rep       Date:  2011-09-25       Impact factor: 2.316

Review 2.  Analysis of In Vitro Aptamer Selection Parameters.

Authors:  Maureen McKeague; Erin M McConnell; Jose Cruz-Toledo; Elyse D Bernard; Amanda Pach; Emily Mastronardi; Xueru Zhang; Michael Beking; Tariq Francis; Amanda Giamberardino; Ashley Cabecinha; Annamaria Ruscito; Rocio Aranda-Rodriguez; Michel Dumontier; Maria C DeRosa
Journal:  J Mol Evol       Date:  2015-11-03       Impact factor: 2.395

Review 3.  The limits of protein sequence comparison?

Authors:  William R Pearson; Michael L Sierk
Journal:  Curr Opin Struct Biol       Date:  2005-06       Impact factor: 6.809

4.  Rules for nuclear localization sequence recognition by karyopherin beta 2.

Authors:  Brittany J Lee; Ahmet E Cansizoglu; Katherine E Süel; Thomas H Louis; Zichao Zhang; Yuh Min Chook
Journal:  Cell       Date:  2006-08-11       Impact factor: 41.582

5.  A theoretical model of Aquifex pyrophilus flagellin: implications for its thermostability.

Authors:  V Raghu Ram Malapaka; Brian C Tripp
Journal:  J Mol Model       Date:  2006-01-13       Impact factor: 1.810

6.  Transmembrane signaling of chemotaxis receptor tar: insights from molecular dynamics simulation studies.

Authors:  Hahnbeom Park; Wonpil Im; Chaok Seok
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

7.  Specific conformational epitope features of pathogenesis-related proteins mediating cross-reactivity between pollen and food allergens.

Authors:  Jose C Jimenez-Lopez; Emma W Gachomo; Oluwole A Ariyo; Lamine Baba-Moussa; Simeon O Kotchoni
Journal:  Mol Biol Rep       Date:  2011-05-20       Impact factor: 2.316

8.  Prediction of peptides binding to the PKA RIIalpha subunit using a hierarchical strategy.

Authors:  Tingjun Hou; Youyong Li; Wei Wang
Journal:  Bioinformatics       Date:  2011-05-17       Impact factor: 6.937

9.  A proteomics search algorithm specifically designed for high-resolution tandem mass spectra.

Authors:  Craig D Wenger; Joshua J Coon
Journal:  J Proteome Res       Date:  2013-01-31       Impact factor: 4.466

10.  Early development of Moniliophthora perniciosa basidiomata and developmentally regulated genes.

Authors:  Acássia B L Pires; Karina P Gramacho; Delmira C Silva; Aristóteles Góes-Neto; Mylene M Silva; Jairo S Muniz-Sobrinho; Ricardo F Porto; Cristiano Villela-Dias; Martin Brendel; Júlio C M Cascardo; Gonçalo A G Pereira
Journal:  BMC Microbiol       Date:  2009-08-04       Impact factor: 3.605

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