Literature DB >> 15036152

ORFeome projects: gateway between genomics and omics.

Jean-François Rual1, David E Hill, Marc Vidal.   

Abstract

The availability of entire genome sequences is expected to revolutionize the way in which biology and medicine are conducted for years to come. However, achieving this promise still requires significant effort in the areas of gene annotation, cloning and expression of thousands of known and heretofore unknown protein-encoding genes. Traditional technologies of manipulating genes are too cumbersome and inefficient when one is dealing with more than a few genes at a time. Entire libraries composed of all protein-encoding open reading frames (ORFs) cloned in highly flexible vectors will be needed to take full advantage of the information found in any genome sequence. The creation of such ORFeome resources using novel technologies for cloning and expressing entire proteomes constitutes an effective gateway from whole genome sequencing efforts to downstream 'omics' applications.

Mesh:

Year:  2004        PMID: 15036152     DOI: 10.1016/j.cbpa.2003.12.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  31 in total

1.  The alliance for cellular signaling plasmid collection: a flexible resource for protein localization studies and signaling pathway analysis.

Authors:  Joelle R Zavzavadjian; Sam Couture; Wei Sun Park; James Whalen; Stephen Lyon; Genie Lee; Eileen Fung; Qingli Mi; Jamie Liu; Estelle Wall; Leah Santat; Kavitha Dhandapani; Christine Kivork; Adrienne Driver; Xiaocui Zhu; Mi Sook Chang; Baljinder Randhawa; Elizabeth Gehrig; Heather Bryan; Mary Verghese; Andreia Maer; Brian Saunders; Yuhong Ning; Shankar Subramaniam; Tobias Meyer; Melvin I Simon; Nancy O'Rourke; Grischa Chandy; Iain D C Fraser
Journal:  Mol Cell Proteomics       Date:  2006-12-27       Impact factor: 5.911

Review 2.  New gateways to discovery.

Authors:  Michael M Goodin; Romit Chakrabarty; Rituparna Banerjee; Sharon Yelton; Seth Debolt
Journal:  Plant Physiol       Date:  2007-12       Impact factor: 8.340

3.  C. elegans nuclear receptor NHR-6 functionally interacts with the jun-1 transcription factor during spermatheca development.

Authors:  Chris R Gissendanner; Derrick Cardin; Chris J Dubose; Moustafa El Sayed; Jeremy S Harmson; Brandon Praslicka; Brian G Rowan
Journal:  Genesis       Date:  2013-11-18       Impact factor: 2.487

4.  Multiplex single-molecule interaction profiling of DNA-barcoded proteins.

Authors:  Liangcai Gu; Chao Li; John Aach; David E Hill; Marc Vidal; George M Church
Journal:  Nature       Date:  2014-09-21       Impact factor: 49.962

5.  Human ORFeome version 1.1: a platform for reverse proteomics.

Authors:  Jean-François Rual; Tomoko Hirozane-Kishikawa; Tong Hao; Nicolas Bertin; Siming Li; Amélie Dricot; Ning Li; Jennifer Rosenberg; Philippe Lamesch; Pierre-Olivier Vidalain; Tracey R Clingingsmith; James L Hartley; Dominic Esposito; David Cheo; Troy Moore; Blake Simmons; Reynaldo Sequerra; Stephanie Bosak; Lynn Doucette-Stamm; Christian Le Peuch; Jean Vandenhaute; Michael E Cusick; Joanna S Albala; David E Hill; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

6.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

7.  WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data.

Authors:  Andreas Massouras; Frederik Decouttere; Korneel Hens; Bart Deplancke
Journal:  Nucleic Acids Res       Date:  2010-05-25       Impact factor: 16.971

8.  Large-Scale Screening of Preferred Interactions of Human Src Homology-3 (SH3) Domains Using Native Target Proteins as Affinity Ligands.

Authors:  Arunas Kazlauskas; Constanze Schmotz; Tapio Kesti; Jussi Hepojoki; Iivari Kleino; Tomonori Kaneko; Shawn S C Li; Kalle Saksela
Journal:  Mol Cell Proteomics       Date:  2016-07-20       Impact factor: 5.911

9.  Efficient mouse transgenesis using Gateway-compatible ROSA26 locus targeting vectors and F1 hybrid ES cells.

Authors:  Omar Nyabi; Michael Naessens; Katharina Haigh; Agnieszka Gembarska; Steven Goossens; Marion Maetens; Sarah De Clercq; Benjamin Drogat; Lieven Haenebalcke; Sonia Bartunkova; Ilse De Vos; Bram De Craene; Mansour Karimi; Geert Berx; Andras Nagy; Pierre Hilson; Jean-Christophe Marine; Jody J Haigh
Journal:  Nucleic Acids Res       Date:  2009-03-11       Impact factor: 16.971

10.  Analysis of vaccinia virus-host protein-protein interactions: validations of yeast two-hybrid screenings.

Authors:  Leiliang Zhang; Nancy Y Villa; Masmudur M Rahman; Sherin Smallwood; Donna Shattuck; Chris Neff; Max Dufford; Jerry S Lanchbury; Joshua Labaer; Grant McFadden
Journal:  J Proteome Res       Date:  2009-09       Impact factor: 4.466

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