Literature DB >> 15035623

Mapping the electron transfer interface between cytochrome b5 and cytochrome c.

Yi Ren1, Wen-Hu Wang, Yun-Hua Wang, Martin Case, Wen Qian, George McLendon, Zhong-Xian Huang.   

Abstract

To characterize the cytochrome b(5) (Cyt b(5))-cytochrome c (Cyt c) interactions during electron transfer, variants of Cyt b(5) have been employed to assess the contributions of electrostatic interactions (substitution of surface charged residues Glu44, Glu48, Glu56, and Asp60 and heme propionate), hydrophobic interactions, and the thermodynamic driving forces (substitutions for hydrophobic residues in heme pocket residues Phe35, Pro40, Val45, Phe58, and Val61). The electrostatic interactions play an important role in maintaining the stability and specificity of the Cyt b(5)-Cyt c complex that is formed. There is no essential effect on the intraprotein complex electron transfer even if most of the involved negatively charged residues on the surface of Cyt b(5) have been removed. The results support a dynamic docking paradigm for Cyt b(5)-Cyt c interactions. The orientation that is optimal for binding may not be optimal form for electron transfer. Substitution of hydrophobic residues does not have a significant effect on the binding between Cyt b(5) and Cyt c; rather, it regulates the electron transfer rates via changes in the driving force. Combining the electron transfer studies of the Cyt b(5)-Cyt c system and the Cyt b(5)-Zn-Cyt c system, we obtain the reorganization energy (0.6 eV) at an ionic strength of 150 mM.

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Year:  2004        PMID: 15035623     DOI: 10.1021/bi036078k

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Effects of interface mutations on association modes and electron-transfer rates between proteins.

Authors:  Seong A Kang; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-14       Impact factor: 11.205

2.  Interactions of uranyl ion with cytochrome b₅ and its His39Ser variant as revealed by molecular simulation in combination with experimental methods.

Authors:  Dun Wan; Li-Fu Liao; Min-Min Zhao; Min-Long Wu; Yi-Mou Wu; Ying-Wu Lin
Journal:  J Mol Model       Date:  2011-06-09       Impact factor: 1.810

3.  Electrostatics of Cytochrome-c assemblies.

Authors:  V Renugopalakrishnan; Miguel Ortiz-Lombardía; Chandra Verma
Journal:  J Mol Model       Date:  2005-05-03       Impact factor: 1.810

4.  The orientations of cytochrome c in the highly dynamic complex with cytochrome b5 visualized by NMR and docking using HADDOCK.

Authors:  Alexander N Volkov; Davide Ferrari; Jonathan A R Worrall; Alexandre M J J Bonvin; Marcellus Ubbink
Journal:  Protein Sci       Date:  2005-02-02       Impact factor: 6.725

Review 5.  Another look at the interaction between mitochondrial cytochrome c and flavocytochrome b (2).

Authors:  Florence Lederer
Journal:  Eur Biophys J       Date:  2011-04-19       Impact factor: 1.733

6.  Characterization and calculation of a cytochrome c-cytochrome b5 complex using NMR data.

Authors:  Shashank Deep; Sang-Choul Im; Erik R P Zuiderweg; Lucy Waskell
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

7.  Distance-independent charge recombination kinetics in cytochrome c-cytochrome c peroxidase complexes: compensating changes in the electronic coupling and reorganization energies.

Authors:  Nan Jiang; Aleksey Kuznetsov; Judith M Nocek; Brian M Hoffman; Brian R Crane; Xiangqian Hu; David N Beratan
Journal:  J Phys Chem B       Date:  2013-07-29       Impact factor: 2.991

8.  Kinetic-dynamic model for conformational control of an electron transfer photocycle: mixed-metal hemoglobin hybrids.

Authors:  Ami D Patel; Judith M Nocek; Brian M Hoffman
Journal:  J Phys Chem B       Date:  2008-08-21       Impact factor: 2.991

9.  Electron transfer interactome of cytochrome C.

Authors:  Alexander N Volkov; Nico A J van Nuland
Journal:  PLoS Comput Biol       Date:  2012-12-06       Impact factor: 4.475

10.  High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.

Authors:  Yu Hirano; Shigenobu Kimura; Taro Tamada
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-06-30
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