Literature DB >> 15034151

Artificial genetic selection for an efficient translation initiation site for expression of human RACK1 gene in Escherichia coli.

Olga B Zhelyabovskaya1, Yuri A Berlin, Klara R Birikh.   

Abstract

In bacterial expression systems, translation initiation is usually the rate limiting and the least predictable stage of protein synthesis. Efficiency of a translation initiation site can vary dramatically depending on the sequence context. This is why many standard expression vectors provide very poor expression levels of some genes. This notion persuaded us to develop an artificial genetic selection protocol, which allows one to find for a given target gene an individual efficient ribosome binding site from a random pool. In order to create Darwinian pressure necessary for the genetic selection, we designed a system based on translational coupling, in which microorganism survival in the presence of antibiotic depends on expression of the target gene, while putting no special requirements on this gene. Using this system we obtained superproducing constructs for the human protein RACK1 (receptor for activated C kinase).

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Year:  2004        PMID: 15034151      PMCID: PMC390350          DOI: 10.1093/nar/gnh050

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

Review 1.  The translation initiation signal in E. coli and its control.

Authors:  E Fuchs
Journal:  Genet Eng (N Y)       Date:  1999

Review 2.  Genetic selection as a tool in mechanistic enzymology and protein design.

Authors:  D Hilvert
Journal:  Ernst Schering Res Found Workshop       Date:  2000

3.  Selection of the simplest RNA that binds isoleucine.

Authors:  Catherine Lozupone; Shankar Changayil; Irene Majerfeld; Michael Yarus
Journal:  RNA       Date:  2003-11       Impact factor: 4.942

Review 4.  Translation initiation in Escherichia coli: old and new questions.

Authors:  N Jacques; M Dreyfus
Journal:  Mol Microbiol       Date:  1990-07       Impact factor: 3.501

5.  Scanning model for translational reinitiation in eubacteria.

Authors:  M R Adhin; J van Duin
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

6.  Expression of recombinant growth hormone in Escherichia coli: effect of the region between the Shine-Dalgarno sequence and the ATG initiation codon.

Authors:  H Dalbøge; S Carlsen; E B Jensen; T Christensen; H H Dahl
Journal:  DNA       Date:  1988 Jul-Aug

7.  Reinitiation of protein synthesis in Escherichia coli can be induced by mRNA cis-elements unrelated to canonical translation initiation signals.

Authors:  A Andrè; A Puca; F Sansone; A Brandi; G Antico; R A Calogero
Journal:  FEBS Lett       Date:  2000-02-18       Impact factor: 4.124

8.  Enhancement of translation by the epsilon element is independent of the sequence of the 460 region of 16S rRNA.

Authors:  M O'Connor; A E Dahlberg
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

9.  Cloning of an intracellular receptor for protein kinase C: a homolog of the beta subunit of G proteins.

Authors:  D Ron; C H Chen; J Caldwell; L Jamieson; E Orr; D Mochly-Rosen
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-01       Impact factor: 11.205

10.  Interaction of "readthrough" acetylcholinesterase with RACK1 and PKCbeta II correlates with intensified fear-induced conflict behavior.

Authors:  Klara R Birikh; Ella H Sklan; Shai Shoham; Hermona Soreq
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-30       Impact factor: 11.205

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  5 in total

1.  Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes.

Authors:  Dokyun Na; Sunjae Lee; Doheon Lee
Journal:  BMC Syst Biol       Date:  2010-05-26

2.  Combinatorial expression vector engineering for tuning of recombinant protein production in Escherichia coli.

Authors:  Nina Bandmann; Per-Ake Nygren
Journal:  Nucleic Acids Res       Date:  2007-01-30       Impact factor: 16.971

3.  The translation of recombinant proteins in E. coli can be improved by in silico generating and screening random libraries of a -70/+96 mRNA region with respect to the translation initiation codon.

Authors:  S Care; C Bignon; M C Pelissier; E Blanc; B Canard; B Coutard
Journal:  Nucleic Acids Res       Date:  2007-12-15       Impact factor: 16.971

4.  Development of expression vectors for Escherichia coli based on the pCR2 replicon.

Authors:  Rupali Walia; J K Deb; K J Mukherjee
Journal:  Microb Cell Fact       Date:  2007-05-10       Impact factor: 5.328

Review 5.  Importance of the 5' regulatory region to bacterial synthetic biology applications.

Authors:  Lisa Tietze; Rahmi Lale
Journal:  Microb Biotechnol       Date:  2021-06-25       Impact factor: 5.813

  5 in total

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