Literature DB >> 15034132

Reconciling the numbers: ESTs versus protein-coding genes.

Anton Nekrutenko1.   

Abstract

The number of expressed sequences greatly surpasses the estimated number of protein-coding genes in mammalian genomes. An evolutionary approach reveals that only 9% to 14% of human-expressed and mouse-expressed sequences are able to code for proteins. Clustering of these sequences using cross-species relationships suggests that millions of expressed sequences may correspond to only approximately 20,000 distinct protein-coding transcripts.

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Year:  2004        PMID: 15034132     DOI: 10.1093/molbev/msh125

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  5 in total

1.  Down-regulation of 14-3-3 isoforms and annexin A5 proteins in lung adenocarcinoma induced by the tobacco-specific nitrosamine NNK in the A/J mouse revealed by proteomic analysis.

Authors:  James D Bortner; Arunangshu Das; Todd M Umstead; Williard M Freeman; Richard Somiari; Cesar Aliaga; David S Phelps; Karam El-Bayoumy
Journal:  J Proteome Res       Date:  2009-08       Impact factor: 4.466

2.  Mutation accumulation may be a minor force in shaping life history traits.

Authors:  Maciej Jan Dańko; Jan Kozłowski; James Walton Vaupel; Annette Baudisch
Journal:  PLoS One       Date:  2012-04-06       Impact factor: 3.240

3.  XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis.

Authors:  Alexander Sczyrba; Michael Beckstette; Ali H Brivanlou; Robert Giegerich; Curtis R Altmann
Journal:  BMC Genomics       Date:  2005-09-14       Impact factor: 3.969

4.  BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.

Authors:  Susan Magdaleno; Patricia Jensen; Craig L Brumwell; Anna Seal; Karen Lehman; Andrew Asbury; Tony Cheung; Tommie Cornelius; Diana M Batten; Christopher Eden; Shannon M Norland; Dennis S Rice; Nilesh Dosooye; Sundeep Shakya; Perdeep Mehta; Tom Curran
Journal:  PLoS Biol       Date:  2006-03-28       Impact factor: 8.029

5.  Evolutionarily new sequences expressed in tumors.

Authors:  Andrei P Kozlov; Yuri P Galachyants; Ilya V Dukhovlinov; Nickolai A Samusik; Ancha V Baranova; Dmitry E Polev; Larisa L Krukovskaya
Journal:  Infect Agent Cancer       Date:  2006-12-25       Impact factor: 2.965

  5 in total

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