Literature DB >> 15033357

Interconverting the catalytic activities of (betaalpha)(8)-barrel enzymes from different metabolic pathways: sequence requirements and molecular analysis.

Sonja Leopoldseder1, Jörg Claren, Catharina Jürgens, Reinhard Sterner.   

Abstract

The (betaalpha)(8)-barrel enzymes N'-[(5'-phosphoribosyl)formimino]-5-aminoimidazole-4-carboxamide ribonucleotide isomerase (tHisA) and imidazole glycerol phosphate synthase (tHisF) from Thermotoga maritima catalyze two successive reactions in the biosynthesis of histidine. In both enzymes, aspartate residues at the C-terminal end of beta-strand 1 (Asp8 in tHisA and Asp11 in tHisF) and beta-strand 5 (Asp127 in tHisA and Asp130 in tHisF) are essential for catalytic activity. It was demonstrated earlier that in tHisA the substitution of Asp127 by valine (tHisA-D127V) generates phosphoribosylanthranilate isomerase (TrpF) activity, a related (betaalpha)(8)-barrel enzyme participating in tryptophan biosynthesis. It is shown here that in tHisF the corresponding substitution of Asp130 by valine (tHisF-D130V) also generates TrpF activity. To determine the effectiveness of individual amino acid exchanges in these conversions, each of the 20 standard amino acid residues was introduced at position 127 of tHisA and 130 of tHisF by saturation random mutagenesis. The tHisA-D127X and tHisF-D130X variants with TrpF activity were identified by selection in vivo, and the proteins purified and characterized. The results obtained show that removal of the negatively charged carboxylate side-chain at the C-terminal end of beta-strand 5 is sufficient to establish TrpF activity in tHisA and tHisF, presumably because it allows the binding of the negatively charged TrpF substrate, phosphoribosylanthranilate. In contrast, the double mutants tHisA-D8N+D127V and tHisF-D11N+D130V did not show detectable activity, demonstrating that the aspartate residues at the C-terminal end of beta-strand 1 are essential for catalysis of the TrpF reaction. The ease with which TrpF activity can be established on both the tHisA and tHisF scaffolds supports the evolutionary relationship of these three enzymes and highlights the functional plasticity of the (betaalpha)(8)-barrel enzyme fold.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15033357     DOI: 10.1016/j.jmb.2004.01.062

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  12 in total

1.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

2.  Mimicking enzyme evolution by generating new (betaalpha)8-barrels from (betaalpha)4-half-barrels.

Authors:  Birte Höcker; Jörg Claren; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-11       Impact factor: 11.205

3.  Two-fold repeated (betaalpha)4 half-barrels may provide a molecular tool for dual substrate specificity.

Authors:  Jochen Kuper; Catharina Doenges; Matthias Wilmanns
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

4.  Enzyme-driven speciation: crystallizing Archaea via lipid capture.

Authors:  Jian Payandeh; Emil F Pai
Journal:  J Mol Evol       Date:  2007-01-25       Impact factor: 2.395

5.  Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds.

Authors:  Jörg Claren; Christoph Malisi; Birte Höcker; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

6.  Bisubstrate specificity in histidine/tryptophan biosynthesis isomerase from Mycobacterium tuberculosis by active site metamorphosis.

Authors:  Anne V Due; Jochen Kuper; Arie Geerlof; Jens Peter von Kries; Matthias Wilmanns
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

7.  A Heritable Recombination system for synthetic Darwinian evolution in yeast.

Authors:  Dante W Romanini; Pamela Peralta-Yahya; Vanessa Mondol; Virginia W Cornish
Journal:  ACS Synth Biol       Date:  2012-12-21       Impact factor: 5.110

8.  Highly diverse protein library based on the ubiquitous (β/α)₈ enzyme fold yields well-structured proteins through in vitro folding selection.

Authors:  Misha V Golynskiy; John C Haugner; Burckhard Seelig
Journal:  Chembiochem       Date:  2013-08-16       Impact factor: 3.164

9.  A study in molecular contingency: glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase.

Authors:  Wayne M Patrick; Ichiro Matsumura
Journal:  J Mol Biol       Date:  2008-01-26       Impact factor: 5.469

10.  TransCent: computational enzyme design by transferring active sites and considering constraints relevant for catalysis.

Authors:  André Fischer; Nils Enkler; Gerd Neudert; Marco Bocola; Reinhard Sterner; Rainer Merkl
Journal:  BMC Bioinformatics       Date:  2009-02-10       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.