Literature DB >> 1502561

Combining experimental information from crystal and solution studies: joint X-ray and NMR refinement.

B Shaanan1, A M Gronenborn, G H Cohen, G L Gilliland, B Veerapandian, D R Davies, G M Clore.   

Abstract

Joint refinement of macromolecules against crystallographic and nuclear magnetic resonance (NMR) observations is presented as a way of combining experimental information from the two methods. The model of interleukin-1 beta derived by the joint x-ray and NMR refinement is shown to be consistent with the experimental observations of both methods and to have crystallographic R value and geometrical parameters that are of the same quality as or better than those of models obtained by conventional crystallographic studies. The few NMR observations that are violated by the model serve as an indicator for genuine differences between the crystal and solution structures. The joint x-ray-NMR refinement can resolve structural ambiguities encountered in studies of multidomain proteins, in which low- to medium-resolution diffraction data can be complemented by higher resolution NMR data obtained for the individual domains.

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Year:  1992        PMID: 1502561     DOI: 10.1126/science.1502561

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  20 in total

1.  Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein.

Authors:  M L Raves; J F Doreleijer; H Vis; C E Vorgias; K S Wilson; R Kaptei
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

2.  High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data.

Authors:  Ming Tang; Lindsay J Sperling; Deborah A Berthold; Charles D Schwieters; Anna E Nesbitt; Andrew J Nieuwkoop; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-09-22       Impact factor: 2.835

3.  Molecular dynamics free energy calculations to assess the possibility of water existence in protein nonpolar cavities.

Authors:  Masataka Oikawa; Yoshiteru Yonetani
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

4.  Water in the polar and nonpolar cavities of the protein interleukin-1β.

Authors:  Hao Yin; Guogang Feng; G Marius Clore; Gerhard Hummer; Jayendran C Rasaiah
Journal:  J Phys Chem B       Date:  2010-11-03       Impact factor: 2.991

5.  Formation of an active dimer during storage of interleukin-1 receptor antagonist in aqueous solution.

Authors:  B S Chang; R M Beauvais; T Arakawa; L O Narhi; A Dong; D I Aparisio; J F Carpenter
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

6.  Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR.

Authors:  R Bryn Fenwick; Henry van den Bedem; James S Fraser; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

7.  Integrated BioNMR - "getting by with a little help from my friends".

Authors:  A M Gronenborn
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

8.  Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR.

Authors:  S K Straus; W R P Scott; C D Schwieters; D A Marvin
Journal:  Eur Biophys J       Date:  2010-11-17       Impact factor: 1.733

9.  Hematopoietic cytokines: similarities and differences in the structures, with implications for receptor binding.

Authors:  A Wlodawer; A Pavlovsky; A Gustchina
Journal:  Protein Sci       Date:  1993-09       Impact factor: 6.725

10.  Synergy of NMR, computation, and X-ray crystallography for structural biology.

Authors:  Blair R Szymczyna; Rebecca E Taurog; Mark J Young; Jamie C Snyder; John E Johnson; James R Williamson
Journal:  Structure       Date:  2009-04-15       Impact factor: 5.006

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