Literature DB >> 15025447

A limiting speed for protein folding at low solvent viscosity.

Linlin Qiu1, Stephen J Hagen.   

Abstract

Because protein folding dynamics are heavily overdamped, Kramers theory predicts the rate of folding to scale inversely with the reaction friction, which is usually interpreted to mean the solvent viscosity. This does not mean, however, that the speed of folding can increase without limit as solvent viscosity decreases. We show that, in a sufficiently fast-folding protein, the folding speed approaches a finite limit at low solvent viscosity, indicating a reaction controlled by internal friction.

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Year:  2004        PMID: 15025447     DOI: 10.1021/ja049966r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

Authors:  Andrea Soranno; Brigitte Buchli; Daniel Nettels; Ryan R Cheng; Sonja Müller-Späth; Shawn H Pfeil; Armin Hoffmann; Everett A Lipman; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-06       Impact factor: 11.205

2.  Denatured states of low-complexity polypeptide sequences differ dramatically from those of foldable sequences.

Authors:  Franco O Tzul; Bruce E Bowler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

3.  Measuring internal friction of an ultrafast-folding protein.

Authors:  Troy Cellmer; Eric R Henry; James Hofrichter; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-19       Impact factor: 11.205

4.  How well does a funneled energy landscape capture the folding mechanism of spectrin domains?

Authors:  Robert B Best
Journal:  J Phys Chem B       Date:  2013-08-16       Impact factor: 2.991

5.  Assessment of local friction in protein folding dynamics using a helix cross-linker.

Authors:  Beatrice N Markiewicz; Hyunil Jo; Robert M Culik; William F DeGrado; Feng Gai
Journal:  J Phys Chem B       Date:  2013-11-18       Impact factor: 2.991

6.  Coordinate-dependent diffusion in protein folding.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

Review 7.  The protein folding problem.

Authors:  Ken A Dill; S Banu Ozkan; M Scott Shell; Thomas R Weikl
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

8.  Excluded volume, local structural cooperativity, and the polymer physics of protein folding rates.

Authors:  Xianghong Qi; John J Portman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-14       Impact factor: 11.205

9.  Worm-like Ising model for protein mechanical unfolding under the effect of osmolytes.

Authors:  Daniel Aioanei; Marco Brucale; Isabella Tessari; Luigi Bubacco; Bruno Samorì
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

10.  Understanding the mechanism of proteasome 20S core particle gating.

Authors:  Michael P Latham; Ashok Sekhar; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-31       Impact factor: 11.205

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