Literature DB >> 15024384

A novel ADP- and zinc-binding fold from function-directed in vitro evolution.

Paola Lo Surdo1, Martin A Walsh, Maurizio Sollazzo.   

Abstract

A great challenge to biologists is to create proteins with novel folds and tailored functions. As an alternative to de novo protein design, we investigated the structure of a randomly generated protein targeted to bind ATP. The crystal structure reveals a novel alpha/beta fold bound to its ligand, representing both the first protein structure derived from in vitro evolution and the first nucleotide-binding protein stabilized by a zinc ion.

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Year:  2004        PMID: 15024384     DOI: 10.1038/nsmb745

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  21 in total

1.  Divergent evolution within protein superfolds inferred from profile-based phylogenetics.

Authors:  Douglas L Theobald; Deborah S Wuttke
Journal:  J Mol Biol       Date:  2005-09-20       Impact factor: 5.469

Review 2.  Laboratory-directed protein evolution.

Authors:  Ling Yuan; Itzhak Kurek; James English; Robert Keenan
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

3.  Correlation between evolutionary structural development and protein folding.

Authors:  Chioko Nagao; Tomoki P Terada; Tetsuya Yomo; Masaki Sasai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-19       Impact factor: 11.205

4.  Tracing primordial protein evolution through structurally guided stepwise segment elongation.

Authors:  Hideki Watanabe; Kazuhiko Yamasaki; Shinya Honda
Journal:  J Biol Chem       Date:  2013-12-19       Impact factor: 5.157

5.  Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.

Authors:  Lei Xie; Philip E Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-02       Impact factor: 11.205

6.  Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutations.

Authors:  Liang Dai; Yaoqi Zhou
Journal:  J Mol Biol       Date:  2011-03-02       Impact factor: 5.469

7.  The multi-zinc finger protein ZNF217 contacts DNA through a two-finger domain.

Authors:  Noelia Nunez; Molly M K Clifton; Alister P W Funnell; Crisbel Artuz; Samantha Hallal; Kate G R Quinlan; Josep Font; Marylène Vandevenne; Surya Setiyaputra; Richard C M Pearson; Joel P Mackay; Merlin Crossley
Journal:  J Biol Chem       Date:  2011-09-11       Impact factor: 5.157

8.  Processes that drove the transition from chemistry to biology: concepts and evidence.

Authors:  Andrew Pohorille
Journal:  Orig Life Evol Biosph       Date:  2012-10-19       Impact factor: 1.950

9.  The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis.

Authors:  Gustavo Caetano-Anollés; Kyung Mo Kim; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2012-01-01       Impact factor: 2.395

10.  Foldability of a Natural De Novo Evolved Protein.

Authors:  Dixie Bungard; Jacob S Copple; Jing Yan; Jimmy J Chhun; Vlad K Kumirov; Scott G Foy; Joanna Masel; Vicki H Wysocki; Matthew H J Cordes
Journal:  Structure       Date:  2017-10-12       Impact factor: 5.006

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