Literature DB >> 15020248

EST-based identification of genes expressed in the hypothalamus of adult tilapia, Oreochromis mossambicus.

Yow-Ling Shiue1, Li-Hsueh Wang, Ting-Ying Chao, Chorng-Horng Lin, Ching-Lin Tsai.   

Abstract

The hypothalamus is involved in many physiological functions in teleosts. To accelerate the molecular analysis of hypothalamic functions, a list of transcripts expressed in the hypothalamus of adult tilapia, Oreochromis mossambicus, was compiled using the expressed sequence tag (EST) strategy. Of 161 clones, 130 clones were unique genes and 31 clones were found to be redundant. Of 130 unique genes, 32.3% (42/130 ESTs) were identified as known genes and 67.7% (88/130 ESTs) as unknown genes. The functional categorization of the known genes was analyzed. Bioinformatic analysis revealed that 62 of 88 unknown genes (62/130 ESTs, 47.7%) showed a significant homology to neither nucleotide nor translated peptide sequences in the public database. These genes might be particularly expressed in the tilapia hypothalamus.

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Year:  2004        PMID: 15020248     DOI: 10.1016/j.bbrc.2004.02.079

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  3 in total

1.  Influence of temperature on the ontogenetic expression of neural development-related genes from developing tilapia brain expressed sequence tags.

Authors:  C L Tsai; L H Wang; Y L Shiue; T Y Chao
Journal:  Mar Biotechnol (NY)       Date:  2007-01-24       Impact factor: 3.619

2.  An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.

Authors:  Bo-Young Lee; Aimee E Howe; Matthew A Conte; Helena D'Cotta; Elodie Pepey; Jean-Francois Baroiller; Federica di Palma; Karen L Carleton; Thomas D Kocher
Journal:  BMC Genomics       Date:  2010-04-30       Impact factor: 3.969

3.  Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection.

Authors:  Yinnan Mu; Feng Ding; Peng Cui; Jingqun Ao; Songnian Hu; Xinhua Chen
Journal:  BMC Genomics       Date:  2010-09-22       Impact factor: 3.969

  3 in total

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