Literature DB >> 15020246

SKIP modifies gene expression by affecting both transcription and splicing.

Keisuke Nagai1, Tomohiro Yamaguchi, Tomonori Takami, Aiko Kawasumi, Masakazu Aizawa, Nobuyuki Masuda, Makoto Shimizu, Sachiko Tominaga, Takashi Ito, Toshiro Tsukamoto, Takashi Osumi.   

Abstract

SKIP has been described as a transcriptional coregulator as well as a spliceosome component, but the relationship between these functions is not clear. We found that SKIP activated reporter gene expression from the basal promoters of viral origin. SKIP exhibited more prominent effect on the promoters with stronger activities, in an experiment employing a series of reporter constructs carrying different numbers of GC boxes. We also found that SKIP suppressed aberrant splicing at a cryptic splice donor site in the luciferase reporter gene. In addition, SKIP suppressed splicing of an extra intron created by a beta-thalassemia mutation in the human beta-globin gene. In the transfection experiment, an intronless reporter exhibited a higher level of expression, but was less significantly activated by SKIP, than the intron-containing reporter. These results indicate that SKIP affects gene expression by both transcriptional activation and regulation of pre-mRNA splicing.

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Year:  2004        PMID: 15020246     DOI: 10.1016/j.bbrc.2004.02.077

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  7 in total

Review 1.  A subset of nuclear receptor coregulators act as coupling proteins during synthesis and maturation of RNA transcripts.

Authors:  Didier Auboeuf; Dennis H Dowhan; Martin Dutertre; Natalia Martin; Susan M Berget; Bert W O'Malley
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

2.  A human splicing factor, SKIP, associates with P-TEFb and enhances transcription elongation by HIV-1 Tat.

Authors:  Vanessa Brès; Nathan Gomes; Loni Pickle; Katherine A Jones
Journal:  Genes Dev       Date:  2005-05-15       Impact factor: 11.361

3.  A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR.

Authors:  Xingsheng Wang; Shaojie Zhang; Jiahai Zhang; Xiaojuan Huang; Chao Xu; Weiwei Wang; Zhijun Liu; Jihui Wu; Yunyu Shi
Journal:  J Biol Chem       Date:  2009-12-09       Impact factor: 5.157

4.  A siRNA-based screen for genes involved in chromosome end protection.

Authors:  Daniel H Lackner; Daniel Durocher; Jan Karlseder
Journal:  PLoS One       Date:  2011-06-23       Impact factor: 3.752

5.  FAST DB: a website resource for the study of the expression regulation of human gene products.

Authors:  Pierre de la Grange; Martin Dutertre; Natalia Martin; Didier Auboeuf
Journal:  Nucleic Acids Res       Date:  2005-07-28       Impact factor: 16.971

6.  H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly.

Authors:  Calvin S Leung; Stephen M Douglass; Marco Morselli; Matthew B Obusan; Marat S Pavlyukov; Matteo Pellegrini; Tracy L Johnson
Journal:  Cell Rep       Date:  2019-06-25       Impact factor: 9.423

7.  Identification of a Gene Sharing a Promoter and Peroxisome Proliferator-Response Elements With Acyl-CoA Oxidase Gene.

Authors:  Mst Hasina Akter; Md Abdur Razzaque; Liu Yang; Toshio Fumoto; Kiyoto Motojima; Tomohiro Yamaguchi; Fumiko Hirose; Takashi Osumi
Journal:  PPAR Res       Date:  2006       Impact factor: 4.964

  7 in total

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