Literature DB >> 15010219

Packaging, replication and recombination of the segmented genome of bacteriophage Phi6 and its relatives.

Leonard Mindich1.   

Abstract

The genomes of bacteriophage Phi6 and its relatives are packaged through a mechanism that involves the recognition and translocation of the three different plus strand transcripts of the segmented dsRNA genomes into preformed polyhedral structures called procapsids or inner cores. The packaging requires hydrolysis of NTPs and takes place in the order S:M:L. Minus strand synthesis begins after the completion of the plus strand packaging. The packaging and replication reactions can be studied in vitro with purified components. A model has been presented that proposes that the program of serially dependent packaging is determined by the conformational changes at the surface of the procapsid due to the amount of RNA packaged at each step. The in vitro packaging and replication system has facilitated the application of reverse genetics and the study of recombination in the family of Cystoviridae.

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Year:  2004        PMID: 15010219     DOI: 10.1016/j.virusres.2003.12.008

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  41 in total

1.  Experimental evidence that source genetic variation drives pathogen emergence.

Authors:  John J Dennehy; Nicholas A Friedenberg; Robert C McBride; Robert D Holt; Paul E Turner
Journal:  Proc Biol Sci       Date:  2010-05-19       Impact factor: 5.349

2.  Electron cryo-tomographic structure of cystovirus phi 12.

Authors:  Guo-Bin Hu; Hui Wei; William J Rice; David L Stokes; Paul Gottlieb
Journal:  Virology       Date:  2007-11-26       Impact factor: 3.616

3.  Initial location of the RNA-dependent RNA polymerase in the bacteriophage Phi6 procapsid determined by cryo-electron microscopy.

Authors:  Anindito Sen; J Bernard Heymann; Naiqian Cheng; Jian Qiao; Leonard Mindich; Alasdair C Steven
Journal:  J Biol Chem       Date:  2008-02-20       Impact factor: 5.157

4.  Stepwise expansion of the bacteriophage ϕ6 procapsid: possible packaging intermediates.

Authors:  Daniel Nemecek; Naiqian Cheng; Jian Qiao; Leonard Mindich; Alasdair C Steven; J Bernard Heymann
Journal:  J Mol Biol       Date:  2011-10-12       Impact factor: 5.469

5.  Cystoviral polymerase complex protein P7 uses its acidic C-terminal tail to regulate the RNA-directed RNA polymerase P2.

Authors:  Sébastien Alphonse; Jamie J Arnold; Shibani Bhattacharya; Hsin Wang; Brian Kloss; Craig E Cameron; Ranajeet Ghose
Journal:  J Mol Biol       Date:  2014-05-09       Impact factor: 5.469

6.  Characterization of Phi2954, a newly isolated bacteriophage containing three dsRNA genomic segments.

Authors:  Xueying Qiao; Yang Sun; Jian Qiao; Fabiana Di Sanzo; Leonard Mindich
Journal:  BMC Microbiol       Date:  2010-02-19       Impact factor: 3.605

7.  Dynamics on multiple timescales in the RNA-directed RNA polymerase from the cystovirus phi6.

Authors:  Zhen Ren; Hsin Wang; Ranajeet Ghose
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

8.  Using cryoEM reconstruction and phase extension to determine crystal structure of bacteriophage ϕ6 major capsid protein.

Authors:  Daniel Nemecek; Pavel Plevka; Evzen Boura
Journal:  Protein J       Date:  2013-12       Impact factor: 2.371

9.  Insights into the pre-initiation events of bacteriophage phi 6 RNA-dependent RNA polymerase: towards the assembly of a productive binary complex.

Authors:  L Peter Sarin; Minna M Poranen; N Marika Lehti; Janne J Ravantti; Minni R L Koivunen; Antti P Aalto; Alberdina A van Dijk; David I Stuart; Jonathan M Grimes; Dennis H Bamford
Journal:  Nucleic Acids Res       Date:  2009-01-07       Impact factor: 16.971

10.  Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate.

Authors:  Igor D Vilfan; Andrea Candelli; Susanne Hage; Antti P Aalto; Minna M Poranen; Dennis H Bamford; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2008-11-05       Impact factor: 16.971

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