Literature DB >> 15007757

Nonlinear mechanical response of DNA due to anisotropic bending elasticity.

F Mohammad-Rafiee1, R Golestanian.   

Abstract

The response of a short DNA segment to bending is studied, taking into account the anisotropy in the bending rigidities caused by the double-helical structure. It is shown that the anisotropy introduces an effective nonlinear twist-bend coupling that can lead to the formation of kinks and modulations in the curvature and/or in the twist, depending on the values of the elastic constants and the imposed deflection angle. The typical wavelength for the modulations, or the distance between the neighboring kinks is found to be set by half of the DNA pitch.

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Year:  2003        PMID: 15007757     DOI: 10.1140/epje/e2004-00032-5

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  10 in total

1.  Thermal fluctuations of elastic filaments with spontaneous curvature and torsion.

Authors:  S Panyukov; Y Rabin
Journal:  Phys Rev Lett       Date:  2000-09-11       Impact factor: 9.161

2.  The structure of DNA in the nucleosome core.

Authors:  Timothy J Richmond; Curt A Davey
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

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Authors:  A V Vologodskii; S D Levene; K V Klenin; M Frank-Kamenetskii; N R Cozzarelli
Journal:  J Mol Biol       Date:  1992-10-20       Impact factor: 5.469

4.  Trefoil knotting revealed by molecular dynamics simulations of supercoiled DNA.

Authors:  T Schlick; W K Olson
Journal:  Science       Date:  1992-08-21       Impact factor: 47.728

5.  Statistical mechanics of supercoiled DNA.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-09

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  Structure of DNA polymerase I Klenow fragment bound to duplex DNA.

Authors:  L S Beese; V Derbyshire; T A Steitz
Journal:  Science       Date:  1993-04-16       Impact factor: 47.728

8.  Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

Authors:  W K Olson; N L Marky; R L Jernigan; V B Zhurkin
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

9.  Geometry and mechanics of DNA superhelicity.

Authors:  C J Benham
Journal:  Biopolymers       Date:  1983-11       Impact factor: 2.505

10.  Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography.

Authors:  S A Darst; E W Kubalek; R D Kornberg
Journal:  Nature       Date:  1989-08-31       Impact factor: 49.962

  10 in total
  1 in total

1.  Geometrical correlations in the nucleosomal DNA conformation and the role of the covalent bonds rigidity.

Authors:  Maryam Ghorbani; Farshid Mohammad-Rafiee
Journal:  Nucleic Acids Res       Date:  2010-10-23       Impact factor: 16.971

  1 in total

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