| Literature DB >> 15004220 |
Michiel J T van Eijk1, José L N Broekhof, Hein J A van der Poel, René C J Hogers, Harrie Schneiders, Judith Kamerbeek, Esther Verstege, Joris W van Aart, Henk Geerlings, Jaap B Buntjer, A Jan van Oeveren, Pieter Vos.
Abstract
Scalable multiplexed amplification technologies are needed for cost-effective large-scale genotyping of genetic markers such as single nucleotide polymorphisms (SNPs). We present SNPWave, a novel SNP genotyping technology to detect various subsets of sequences in a flexible fashion in a fixed detection format. SNPWave is based on highly multiplexed ligation, followed by amplification of up to 20 ligated probes in a single PCR. Depending on the multiplexing level of the ligation reaction, the latter employs selective amplification using the amplified fragment length polymorphism (AFLP) technology. Detection of SNPWave reaction products is based on size separation on a sequencing instrument with multiple fluorescence labels and short run times. The SNPWave technique is illustrated by a 100-plex genotyping assay for Arabidopsis, a 40-plex assay for tomato and a 10-plex assay for Caenorhabditis elegans, detected on the MegaBACE 1000 capillary sequencer.Entities:
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Year: 2004 PMID： 15004220 PMCID： PMC390319 DOI： 10.1093/nar/gnh045
Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971