Literature DB >> 15003212

Genomics tools for QTL analysis and gene discovery.

Justin O Borevitz1, Joanne Chory.   

Abstract

In recent years, several new genomics resources and tools have become available that will greatly assist quantitative trait locus (QTL) mapping and cloning of the corresponding genes. Genome sequences, tens of thousands of molecular markers, microarrays, and knock-out collections are being applied to QTL mapping, facilitating the use of natural accessions for gene discovery.

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Year:  2004        PMID： 15003212     DOI： 10.1016/j.pbi.2004.01.011

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN： 1369-5266            Impact factor:   7.834


  40 in total

Review 1.  Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana.

Authors:  Joy Bergelson; Fabrice Roux
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

2.  Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.

Authors:  Nils Rostoks; Sharon Mudie; Linda Cardle; Joanne Russell; Luke Ramsay; Allan Booth; Jan T Svensson; Steve I Wanamaker; Harkamal Walia; Edmundo M Rodriguez; Peter E Hedley; Hui Liu; Jenny Morris; Timothy J Close; David F Marshall; Robbie Waugh
Journal:  Mol Genet Genomics       Date:  2005-10-22       Impact factor: 3.291

Review 3.  Analysis of C and N metabolisms and of C/N interactions using quantitative genetics.

Authors:  Anne Krapp; Vera Saliba-Colombani; Françoise Daniel-Vedele
Journal:  Photosynth Res       Date:  2005       Impact factor: 3.573

4.  A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues.

Authors:  T C Marcel; R K Varshney; M Barbieri; H Jafary; M J D de Kock; A Graner; R E Niks
Journal:  Theor Appl Genet       Date:  2006-11-18       Impact factor: 5.699

5.  Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers.

Authors:  Matthieu Simon; Olivier Loudet; Stéphanie Durand; Aurélie Bérard; Dominique Brunel; François-Xavier Sennesal; Mylène Durand-Tardif; Georges Pelletier; Christine Camilleri
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

Review 6.  Systems biology uncovers the foundation of natural genetic diversity.

Authors:  Daniel J Kliebenstein
Journal:  Plant Physiol       Date:  2009-11-20       Impact factor: 8.340

7.  Targeted discovery of quantitative trait loci for resistance to northern leaf blight and other diseases of maize.

Authors:  Chia-Lin Chung; Jesse Poland; Kristen Kump; Jacqueline Benson; Joy Longfellow; Ellie Walsh; Peter Balint-Kurti; Rebecca Nelson
Journal:  Theor Appl Genet       Date:  2011-04-28       Impact factor: 5.699

8.  Quantitative trait loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability.

Authors:  Marco Maccaferri; Maria Corinna Sanguineti; Simona Corneti; José Luis Araus Ortega; Moncef Ben Salem; Jordi Bort; Enzo DeAmbrogio; Luis Fernando Garcia del Moral; Andrea Demontis; Ahmed El-Ahmed; Fouad Maalouf; Hassan Machlab; Vanessa Martos; Marc Moragues; Jihan Motawaj; Miloudi Nachit; Nasserlehaq Nserallah; Hassan Ouabbou; Conxita Royo; Amor Slama; Roberto Tuberosa
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

Review 9.  A focus on natural variation for abiotic constraints response in the model species Arabidopsis thaliana.

Authors:  Valérie Lefebvre; Seifollah Poormohammad Kiani; Mylène Durand-Tardif
Journal:  Int J Mol Sci       Date:  2009-08-13       Impact factor: 5.923

10.  Restriction site polymorphism-based candidate gene mapping for seedling drought tolerance in cowpea [Vigna unguiculata (L.) Walp.].

Authors:  Wellington Muchero; Jeffrey D Ehlers; Philip A Roberts
Journal:  Theor Appl Genet       Date:  2009-10-16       Impact factor: 5.699
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