Literature DB >> 15000350

The virtual microscope.

Umit Catalyürek1, Michael D Beynon, Chialin Chang, Tahsin Kurc, Alan Sussman, Joel Saltz.   

Abstract

We present the design and implementation of the Virtual Microscope, a software system employing a client/server architecture to provide a realistic emulation of a high power light microscope. The system provides a form of completely digital telepathology, allowing simultaneous access to archived digital slide images by multiple clients. The main problem the system targets is storing and processing the extremely large quantities of data required to represent a collection of slides. The Virtual Microscope client software runs on the end user's PC or workstation, while database software for storing, retrieving and processing the microscope image data runs on a parallel computer or on a set of workstations at one or more potentially remote sites. We have designed and implemented two versions of the data server software. One implementation is a customization of a database system framework that is optimized for a tightly coupled parallel machine with attached local disks. The second implementation is component-based, and has been designed to accommodate access to and processing of data in a distributed, heterogeneous environment. We also have developed caching client software, implemented in Java, to achieve good response time and portability across different computer platforms. The performance results presented show that the Virtual Microscope systems scales well, so that many clients can be adequately serviced by an appropriately configured data server.

Mesh:

Year:  2003        PMID: 15000350     DOI: 10.1109/titb.2004.823952

Source DB:  PubMed          Journal:  IEEE Trans Inf Technol Biomed        ISSN: 1089-7771


  18 in total

1.  A grid-based image archival and analysis system.

Authors:  Shannon Hastings; Scott Oster; Stephen Langella; Tahsin M Kurc; Tony Pan; Umit V Catalyurek; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2005-01-31       Impact factor: 4.497

Review 2.  Factors to keep in mind when introducing virtual microscopy.

Authors:  Katharina Glatz-Krieger; Udo Spornitz; Alain Spatz; Michael J Mihatsch; Dieter Glatz
Journal:  Virchows Arch       Date:  2005-11-22       Impact factor: 4.064

3.  Enterprise imaging and multi-departmental PACS.

Authors:  Björn Bergh
Journal:  Eur Radiol       Date:  2006-08-16       Impact factor: 5.315

Review 4.  [Virtual microscopy: first applications].

Authors:  K Glatz-Krieger; D Glatz; M J Mihatsch
Journal:  Pathologe       Date:  2006-11       Impact factor: 1.011

Review 5.  Diagnostic pathology and laboratory medicine in the age of "omics": a paper from the 2006 William Beaumont Hospital Symposium on Molecular Pathology.

Authors:  William G Finn
Journal:  J Mol Diagn       Date:  2007-07-25       Impact factor: 5.568

6.  Large-scale biomedical image analysis in grid environments.

Authors:  Vijay S Kumar; Benjamin Rutt; Tahsin Kurc; Umit V Catalyurek; Tony C Pan; Sunny Chow; Stephan Lamont; Maryann Martone; Joel H Saltz
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-03

7.  Towards Building a High Performance Spatial Query System for Large Scale Medical Imaging Data.

Authors:  Ablimit Aji; Fusheng Wang; Joel H Saltz
Journal:  Proc ACM SIGSPATIAL Int Conf Adv Inf       Date:  2012-11-06

8.  Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data.

Authors:  David A Gutman; Jake Cobb; Dhananjaya Somanna; Yuna Park; Fusheng Wang; Tahsin Kurc; Joel H Saltz; Daniel J Brat; Lee A D Cooper
Journal:  J Am Med Inform Assoc       Date:  2013-07-25       Impact factor: 4.497

9.  A supervised visual model for finding regions of interest in basal cell carcinoma images.

Authors:  Ricardo Gutiérrez; Francisco Gómez; Lucía Roa-Peña; Eduardo Romero
Journal:  Diagn Pathol       Date:  2011-03-29       Impact factor: 2.644

10.  Real-time whole slide mosaicing for non-automated microscopes in histopathology analysis.

Authors:  Alessandro Gherardi; Alessandro Bevilacqua
Journal:  J Pathol Inform       Date:  2013-03-30
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.