Literature DB >> 14997522

Structural models of the photointermediates in the rhodopsin photocascade, lumirhodopsin, metarhodopsin I, and metarhodopsin II.

Masaji Ishiguro1, Yoshiaki Oyama, Takahiro Hirano.   

Abstract

Model building of the two photointermediates, lumirhodopsin and metarhodopsin I, and the activated form of rhodopsin, metarhodopsin II, is described. An outward swing of the C-terminal portion of transmembrane segment 3, pivoting on Cys110 at the N-terminal end of transmembrane segment 3, led to structural models of lumirhodopsin and metarhodopsin I. The conformation of the chromophore in the lumirhodopsin and metarhodopsin I models is controlled by the motion of transmembrane segment 3 and agreed closely with the hydrogen-bonding states of the protonated Schiff base in lumirhodopsin and metarhodopsin I as deduced from their FTIR and resonance Raman spectra and with the negative and positive CD bands of lumirhodopsin and metarhodopsin I, respectively. The structure of metarhodopsin II was constructed by an outward swing of transmembrane segment 3 and the rigid-body motion of transmembrane segment 6. The arrangement of the entire transmembrane segment of the metarhodopsin II model closely agreed with the electron paramagnetic resonance spectra of spin-labeled rhodopsin mutants and provided a structural basis for the protonation of Glu134, which is a key process in transducin activation.

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Year:  2004        PMID: 14997522     DOI: 10.1002/cbic.200300668

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  4 in total

1.  FFA1-selective agonistic activity based on docking simulation using FFA1 and GPR120 homology models.

Authors:  Masato Takeuchi; Akira Hirasawa; Takafumi Hara; Ikuo Kimura; Tatsuya Hirano; Takayoshi Suzuki; Naoki Miyata; Takeo Awaji; Masaji Ishiguro; Gozoh Tsujimoto
Journal:  Br J Pharmacol       Date:  2013-04       Impact factor: 8.739

2.  Mechanism of signal propagation upon retinal isomerization: insights from molecular dynamics simulations of rhodopsin restrained by normal modes.

Authors:  Basak Isin; Klaus Schulten; Emad Tajkhorshid; Ivet Bahar
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

3.  Characterization of the beta-D-glucopyranoside binding site of the human bitter taste receptor hTAS2R16.

Authors:  Takanobu Sakurai; Takumi Misaka; Masaji Ishiguro; Katsuyoshi Masuda; Taishi Sugawara; Keisuke Ito; Takuya Kobayashi; Shinji Matsuo; Yoshiro Ishimaru; Tomiko Asakura; Keiko Abe
Journal:  J Biol Chem       Date:  2010-07-06       Impact factor: 5.157

4.  Identification of key amino acid residues in the hTGR5-nomilin interaction and construction of its binding model.

Authors:  Takashi Sasaki; Moeko Mita; Naho Ikari; Ayane Kuboyama; Shuzo Hashimoto; Tatsuya Kaneko; Masaji Ishiguro; Makoto Shimizu; Jun Inoue; Ryuichiro Sato
Journal:  PLoS One       Date:  2017-06-08       Impact factor: 3.240

  4 in total

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