Literature DB >> 14990454

ChromoWheel: a new spin on eukaryotic chromosome visualization.

Sven Ekdahl1, Erik L L Sonnhammer.   

Abstract

ChromoWheel is an Internet browser application for generating whole-genome illustrations. It can be used to depict chromosomes, genes and relations between chromosomal loci. The circular layout of chromosomes is advantageous for showing relationships between different chromosomes, as the connecting line never crosses over a chromosome. All graphical image components are in the vector-based format Scalable Vector Graphics, which are highly scaleable and admit user interaction. ChromoWheel can either be run with user-provided data in the generic SFS format, or as a browser front-end for precompiled genomic data.

Mesh:

Year:  2004        PMID: 14990454     DOI: 10.1093/bioinformatics/btg448

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  Information Visualization Techniques in Bioinformatics during the Postgenomic Era.

Authors:  Ying Tao; Yang Liu; Carol Friedman; Yves A Lussier
Journal:  Drug Discov Today Biosilico       Date:  2004-11

2.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

3.  ArkMAP: integrating genomic maps across species and data sources.

Authors:  Trevor Paterson; Andy Law
Journal:  BMC Bioinformatics       Date:  2013-08-13       Impact factor: 3.169

4.  CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data.

Authors:  Delphine Naquin; Yves d'Aubenton-Carafa; Claude Thermes; Maud Silvain
Journal:  BMC Bioinformatics       Date:  2014-06-18       Impact factor: 3.169

  4 in total

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