Literature DB >> 14988114

'Harvester': a fast meta search engine of human protein resources.

Urban Liebel1, Bjoern Kindler, Rainer Pepperkok.   

Abstract

SUMMARY: We have developed a Web-based tool named 'Harvester' that bulk-collects bioinformatic data on human proteins from various databases and prediction servers. The information on every single protein is assembled on a single HTML page as a combination of database screen-shots and plain text. A full text meta search engine, similar to Google trade mark, allows screening of the whole genome proteome for current protein functions and predictions in a few seconds. With Harvester it is now possible to compare and check the quality of different database entries and prediction algorithms on a single page. A feedback forum allows users to comment on Harvester and to report database inconsistencies. AVAILABILITY: The service is freely available to the academic community at http://harvester.embl.de.

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Year:  2004        PMID： 14988114     DOI： 10.1093/bioinformatics/bth146

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  9 in total

1.  RCPdb: An evolutionary classification and codon usage database for repeat-containing proteins.

Authors:  Noel G Faux; Gavin A Huttley; Khalid Mahmood; Geoffrey I Webb; Maria Garcia de la Banda; James C Whisstock
Journal:  Genome Res       Date:  2007-06-13       Impact factor: 9.043

Review 2.  Behavioral barcoding in the cloud: embracing data-intensive digital phenotyping in neuropharmacology.

Authors:  David Kokel; Andrew J Rennekamp; Asmi H Shah; Urban Liebel; Randall T Peterson
Journal:  Trends Biotechnol       Date:  2012-05-29       Impact factor: 19.536

3.  Serologic markers of effective tumor immunity against chronic lymphocytic leukemia include nonmutated B-cell antigens.

Authors:  Ovidiu Marina; Ursula Hainz; Melinda A Biernacki; Wandi Zhang; Ann Cai; Jonathan S Duke-Cohan; Fenglong Liu; Vladimir Brusic; Donna Neuberg; Jeffery L Kutok; Edwin P Alyea; Christine M Canning; Robert J Soiffer; Jerome Ritz; Catherine J Wu
Journal:  Cancer Res       Date:  2010-02-02       Impact factor: 12.701

4.  High-content screening microscopy identifies novel proteins with a putative role in secretory membrane traffic.

Authors:  Vytaute Starkuviene; Urban Liebel; Jeremy C Simpson; Holger Erfle; Annemarie Poustka; Stefan Wiemann; Rainer Pepperkok
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

5.  Transcriptome analysis of human immune responses following live vaccine strain (LVS) Francisella tularensis vaccination.

Authors:  Claudette L Fuller; Katherine C Brittingham; Mark W Porter; Matthew J Hepburn; Patricia L Petitt; Phillip R Pittman; Sina Bavari
Journal:  Mol Immunol       Date:  2007-03-08       Impact factor: 4.407

6.  Facilitating drug discovery: an automated high-content inflammation assay in zebrafish.

Authors:  Christine Wittmann; Markus Reischl; Asmi H Shah; Ralf Mikut; Urban Liebel; Clemens Grabher
Journal:  J Vis Exp       Date:  2012-07-16       Impact factor: 1.355

7.  'Sciencenet'--towards a global search and share engine for all scientific knowledge.

Authors:  Dominic S Lütjohann; Asmi H Shah; Michael P Christen; Florian Richter; Karsten Knese; Urban Liebel
Journal:  Bioinformatics       Date:  2011-04-14       Impact factor: 6.937

8.  ProGMap: an integrated annotation resource for protein orthology.

Authors:  Arnold Kuzniar; Ke Lin; Ying He; Harm Nijveen; Sándor Pongor; Jack A M Leunissen
Journal:  Nucleic Acids Res       Date:  2009-06-03       Impact factor: 16.971

9.  Charting the proteome of Cryptosporidium parvum sporozoites using sequence similarity-based BLAST searching.

Authors:  A M A M Z Siddiki; Jonathan M Wastling
Journal:  J Vet Sci       Date:  2009-09       Impact factor: 1.603
  9 in total

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