Literature DB >> 14988113

GenAlyzer: interactive visualization of sequence similarities between entire genomes.

Jomuna V Choudhuri1, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich.   

Abstract

SUMMARY: Genalyzer is a software tool designed for the interactive visualization of sequence matches between DNA or protein sequences. It provides visualizations on different levels of granularity, from complete overviews via zoomed regions to alignments of particular matching substrings. Genalyzer can efficiently handle very large datasets, allowing to display tens of thousands of matches between sequences of tens of millions of bases. AVAILABILITY: Genalyzer is available free of charge for non-commercial research institutions. For more details, see http://www.genalyzer.de

Mesh：

Year:  2004        PMID： 14988113     DOI： 10.1093/bioinformatics/bth161

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

2.  Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution.

Authors:  Martin Völker; Niclas Backström; Benjamin M Skinner; Elizabeth J Langley; Sydney K Bunzey; Hans Ellegren; Darren K Griffin
Journal:  Genome Res       Date:  2010-03-31       Impact factor: 9.043

3.  Novel tools for characterising inter and intra chromosomal rearrangements in avian microchromosomes.

Authors:  Pamela E Lithgow; Rebecca O'Connor; Deborah Smith; Gothami Fonseka; Abdullah Al Mutery; Claudia Rathje; Richard Frodsham; Patricia O'Brien; Fumio Kasai; Malcolm A Ferguson-Smith; Benjamin M Skinner; Darren K Griffin
Journal:  Chromosome Res       Date:  2014-04       Impact factor: 5.239

4.  Characterization of the human lineage-specific pericentric inversion that distinguishes human chromosome 1 from the homologous chromosomes of the great apes.

Authors:  Justyna M Szamalek; Violaine Goidts; David N Cooper; Horst Hameister; Hildegard Kehrer-Sawatzki
Journal:  Hum Genet       Date:  2006-06-15       Impact factor: 4.132

5.  Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints.

Authors:  B M Skinner; D K Griffin
Journal:  Heredity (Edinb)       Date:  2011-11-02       Impact factor: 3.821

6.  Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice.

Authors:  Torben Asp; Stephen Byrne; Heidrun Gundlach; Rémy Bruggmann; Klaus F X Mayer; Jeppe R Andersen; Mingliang Xu; Morten Greve; Ingo Lenk; Thomas Lübberstedt
Journal:  Mol Genet Genomics       Date:  2011-11-12       Impact factor: 3.291

7.  Refinement of Bos taurus sequence assembly based on BAC-FISH experiments.

Authors:  Giulia Partipilo; Pietro D'Addabbo; Giovanni M Lacalandra; George E Liu; Mariano Rocchi
Journal:  BMC Genomics       Date:  2011-12-30       Impact factor: 3.969

8.  The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae.

Authors:  Jean-Charles de Cambiaire; Christian Otis; Monique Turmel; Claude Lemieux
Journal:  BMC Genomics       Date:  2007-07-04       Impact factor: 3.969

9.  BOV--a web-based BLAST output visualization tool.

Authors:  Rajesh Gollapudi; Kashi Vishwanath Revanna; Chris Hemmerich; Sarah Schaack; Qunfeng Dong
Journal:  BMC Genomics       Date:  2008-09-15       Impact factor: 3.969

10.  The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes.

Authors:  Jean-François Pombert; Claude Lemieux; Monique Turmel
Journal:  BMC Biol       Date:  2006-02-03       Impact factor: 7.431
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