Literature DB >> 14981781

Genome resource for the Indonesian coelacanth, Latimeria menadoensis.

Joshua Danke1, Tsutomu Miyake, Thomas Powers, Jacqueline Schein, Heesun Shin, Ian Bosdet, Mark Erdmann, Roy Caldwell, Chris T Amemiya.   

Abstract

We have generated a BAC library from the Indonesian coelacanth, Latimeria menadoensis. This library was generated using genomic DNA of nuclei isolated from heart tissue, and has an average insert size of 171 kb. There are a total of 288 384-well microtiter dishes in the library (110,592 clones) and its genomic representation is estimated to encompass > or = 7X coverage based on the amount of DNA presumably cloned in the library as well as via hybridization with probes to a small set of single copy genes. This genomic resource has been made available to the public and should prove useful to the scientific community for many applications, including comparative genomics, molecular evolution and conservation genetics. Copyright 2004 Wiley-Liss, Inc.

Entities:  

Mesh:

Year:  2004        PMID: 14981781     DOI: 10.1002/jez.a.20024

Source DB:  PubMed          Journal:  J Exp Zool A Comp Exp Biol        ISSN: 1548-8969


  16 in total

1.  A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome.

Authors:  Jeramiah J Smith; Kenta Sumiyama; Chris T Amemiya
Journal:  Mol Biol Evol       Date:  2011-10-31       Impact factor: 16.240

2.  Antarctic notothenioid fishes: genomic resources and strategies for analyzing an adaptive radiation.

Authors:  H W Detrich; Chris T Amemiya
Journal:  Integr Comp Biol       Date:  2010-07-12       Impact factor: 3.326

3.  Evolutionary constraint on Otx2 neuroectoderm enhancers-deep conservation from skate to mouse and unique divergence in teleost.

Authors:  Daisuke Kurokawa; Yusuke Sakurai; Ai Inoue; Rika Nakayama; Nobuyoshi Takasaki; Yoko Suda; Tsutomu Miyake; Chris T Amemiya; Shinichi Aizawa
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

4.  Genome enablement of the notothenioidei: genome size estimates from 11 species and BAC libraries from 2 representative taxa.

Authors:  H William Detrich; Andrew Stuart; Michael Schoenborn; Sandra K Parker; Barbara A Methé; Chris T Amemiya
Journal:  J Exp Zool B Mol Dev Evol       Date:  2010-07-15       Impact factor: 2.656

5.  Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis.

Authors:  Alberto Pallavicini; Adriana Canapa; Marco Barucca; Jessica Alfőldi; Maria Assunta Biscotti; Francesco Buonocore; Gianluca De Moro; Federica Di Palma; Anna Maria Fausto; Mariko Forconi; Marco Gerdol; Daisy Monica Makapedua; Jason Turner-Meier; Ettore Olmo; Giuseppe Scapigliati
Journal:  BMC Genomics       Date:  2013-08-08       Impact factor: 3.969

6.  A family of conserved noncoding elements derived from an ancient transposable element.

Authors:  Xiaohui Xie; Michael Kamal; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

7.  Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.

Authors:  Chris T Amemiya; Thomas P Powers; Sonja J Prohaska; Jane Grimwood; Jeremy Schmutz; Mark Dickson; Tsutomu Miyake; Michael A Schoenborn; Richard M Myers; Francis H Ruddle; Peter F Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-05       Impact factor: 11.205

8.  Genome complexity in the coelacanth is reflected in its adaptive immune system.

Authors:  Nil Ratan Saha; Tatsuya Ota; Gary W Litman; John Hansen; Zuly Parra; Ellen Hsu; Francesco Buonocore; Adriana Canapa; Jan-Fang Cheng; Chris T Amemiya
Journal:  J Exp Zool B Mol Dev Evol       Date:  2014-01-24       Impact factor: 2.656

9.  Isolation of a Latimeria menadoensis heat shock protein 70 (Lmhsp70) that has all the features of an inducible gene and encodes a functional molecular chaperone.

Authors:  Keoagile W Modisakeng; Meesbah Jiwaji; Eva-Rachele Pesce; Jacques Robert; Chris T Amemiya; Rosemary A Dorrington; Gregory L Blatch
Journal:  Mol Genet Genomics       Date:  2009-05-15       Impact factor: 3.291

10.  Evolutionary insights into the unique electromotility motor of mammalian outer hair cells.

Authors:  Oseremen E Okoruwa; Michael D Weston; Divvya C Sanjeevi; Amanda R Millemon; Bernd Fritzsch; Richard Hallworth; Kirk W Beisel
Journal:  Evol Dev       Date:  2008 May-Jun       Impact factor: 1.930

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.