Literature DB >> 14976604

A survival method to estimate the time to occurrence of mutations: an application to thymidine analogue mutations in HIV-1-infected patients.

Philippe Flandre1, Diane Descamps, Veronique Joly, Vincent Meiffredy, Catherine Tamalet, Jacques Izopet, Francoise Brun-Vezinet.   

Abstract

Virologic studies of human immunodeficiency virus type 1-infected patients have investigated either the emergence of resistance mutations according to the treatment received (type I) or their effect on subsequent regimens (type II). Type I studies provide an estimation of the frequency distribution of mutations for a given duration of therapy, but the delay to emergence of these mutations cannot be assessed. We suggest using a nonparametric estimator that generalizes the Kaplan-Meier method to data from type II studies to estimate the time to occurrence of mutations. Patients had no treatment interruption before viral genotyping. Although the curves should be interpreted with caution, they provide useful information about the kinetics of the emergence of mutations. The method was applied to the emergence of thymidine analogue mutations in patients previously treated with zidovudine (ZDV) plus didanosine or zalcitabine. Although K70R has been described as the first mutation to appear in patients receiving ZDV monotherapy, the T215Y/F mutation appeared first in patients receiving dual-nucleoside combination therapy.

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Year:  2004        PMID: 14976604     DOI: 10.1086/381676

Source DB:  PubMed          Journal:  J Infect Dis        ISSN: 0022-1899            Impact factor:   5.226


  4 in total

1.  Immunologic criteria are poor predictors of virologic outcome: implications for HIV treatment monitoring in resource-limited settings.

Authors:  Holly E Rawizza; Beth Chaplin; Seema T Meloni; Geoffrey Eisen; Tara Rao; Jean-Louis Sankalé; Abdoulaye Dieng-Sarr; Oche Agbaji; Daniel I Onwujekwe; Wadzani Gashau; Reuben Nkado; Ernest Ekong; Prosper Okonkwo; Robert L Murphy; Phyllis J Kanki
Journal:  Clin Infect Dis       Date:  2011-12       Impact factor: 9.079

2.  Effect of the human immunodeficiency virus type 1 reverse transcriptase polymorphism Leu-214 on replication capacity and drug susceptibility.

Authors:  Maria Carmen Puertas; Maria Jose Buzón; Anna Artese; Stefano Alcaro; Luis Menendez-Arias; Carlo Federico Perno; Bonaventura Clotet; Francesca Ceccherini-Silberstein; Javier Martinez-Picado
Journal:  J Virol       Date:  2009-05-20       Impact factor: 5.103

3.  Data-intensive analysis of HIV mutations.

Authors:  Mina Cintho Ozahata; Ester Cerdeira Sabino; Ricardo Sobhie Diaz; Roberto M Cesar; João Eduardo Ferreira
Journal:  BMC Bioinformatics       Date:  2015-02-05       Impact factor: 3.169

4.  Implication of First-Line Antiretroviral Therapy Choice on Second-Line Options.

Authors:  Seema T Meloni; Chika K Onwuamah; Oche Agbaji; Beth Chaplin; David O Olaleye; Rosemary Audu; Jay Samuels; Oliver Ezechi; Godwin Imade; Adesola Z Musa; Georgina Odaibo; Jonathan Okpokwu; Holly Rawizza; Muhammad A Mu'azu; Ibrahim Dalhatu; Mukhtar Ahmed; Prosper Okonkwo; Elliot Raizes; Innocent A O Ujah; Chunfu Yang; Emmanuel O Idigbe; Phyllis J Kanki
Journal:  Open Forum Infect Dis       Date:  2017-11-02       Impact factor: 3.835

  4 in total

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