Literature DB >> 14976031

GeneSyn: a tool for detecting conserved gene order across genomes.

G Pavesi1, G Mauri, F Iannelli, C Gissi, G Pesole.   

Abstract

UNLABELLED: GeneSyn is a software tool that allows automatic detection of conserved gene order from annotated genomes. AVAILABILITY: Available free of charge for Unix/Linux/Cygwin platforms at ftp://159.149.110.11/pub/GeneSyn_1.0/ SUPPLEMENTARY INFORMATION: ftp://159.149.110.11/pub/GeneSyn_1.0/

Entities:  

Mesh：

Year:  2004        PMID： 14976031     DOI： 10.1093/bioinformatics/bth102

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.

Authors:  Giulio Pavesi; Paolo Mereghetti; Giancarlo Mauri; Graziano Pesole
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

Authors:  Anna Schönberg; Christoph Theunert; Mingkun Li; Mark Stoneking; Ivan Nasidze
Journal:  Eur J Hum Genet       Date:  2011-04-13       Impact factor: 4.246

3.  New insights into the evolution of Entomopoxvirinae from the complete genome sequences of four entomopoxviruses infecting Adoxophyes honmai, Choristoneura biennis, Choristoneura rosaceana, and Mythimna separata.

Authors:  Julien Thézé; Jun Takatsuka; Zhen Li; Julie Gallais; Daniel Doucet; Basil Arif; Madoka Nakai; Elisabeth A Herniou
Journal:  J Virol       Date:  2013-05-15       Impact factor: 5.103

4.  i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets.

Authors:  Sebastian Proost; Jan Fostier; Dieter De Witte; Bart Dhoedt; Piet Demeester; Yves Van de Peer; Klaas Vandepoele
Journal:  Nucleic Acids Res       Date:  2011-11-18       Impact factor: 16.971

5.  Deep sequencing of mixed total DNA without barcodes allows efficient assembly of highly plastic ascidian mitochondrial genomes.

Authors:  Nimrod D Rubinstein; Tamar Feldstein; Noa Shenkar; Fidel Botero-Castro; Francesca Griggio; Francesco Mastrototaro; Frédéric Delsuc; Emmanuel J P Douzery; Carmela Gissi; Dorothée Huchon
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

6.  The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level.

Authors:  Fabio Iannelli; Francesca Griggio; Graziano Pesole; Carmela Gissi
Journal:  BMC Evol Biol       Date:  2007-08-31       Impact factor: 3.260

7.  GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes.

Authors:  Srikanth Celamkoti; Sashidhara Kundeti; Anjan Purkayastha; Raja Mazumder; Charles Buck; Donald Seto
Journal:  BMC Bioinformatics       Date:  2004-05-05       Impact factor: 3.169
  7 in total

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